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The map label for this gene is araC [H]

Identifier: 154244933

GI number: 154244933

Start: 1098401

End: 1099288

Strand: Reverse

Name: araC [H]

Synonym: Xaut_0983

Alternate gene names: 154244933

Gene position: 1099288-1098401 (Counterclockwise)

Preceding gene: 154244940

Following gene: 154244930

Centisome position: 20.71

GC content: 69.48

Gene sequence:

>888_bases
ATGCGCATGCACGACATCGGTTCATGGCCACGCAACGCGACGCTGGCGAGCAGCGACGGTCGCGGGTGGGCCAACATCCA
GGCGGCCCTGCTCGCGGTGGATGCGTGGAGCGGCGAGCTCGCCCCGATCGGGAATCCGTGCCTGGGCTATTGCGTCAATC
AGCCGGCGCGGATCCGCCGCCGGGTCAGCGGCGGCGGCGCCATCGAGACCGCCACGCTGCGGCCCCGGCAGTTCCATCTC
ATTCCCGCGCTGGAGGCGAGCGAGTGGCATCGTCACGGTCGCTCGGAGATGCTGACCTTGTACCTGCGGCAGGAGATGCT
CGACGCGGCCGCGGCCCGGGCGTGCAGCGCGCATGTGGGGCGGGTGGAGCTGGATGTGCCGCTCGGCGTGCACGATCCGC
TGCTGGAACAGCTGGCCCTCGCCGTGCTGGATATCCTACGGCATCCGGAAGACGCCGGATCGCGCTTCTATGCGGATGAA
CTTGCCCACGCCGCCTATGCCCACGTGGTTCGCGGCTATACGGCGGTGGGGCGCTCCTCGACGTTCGACGGCGAGCGGGA
CGGCGCCCCGGAGCGGGCGCTACGCCGCGTATGCGAGCTGATCGTCGACCGGATCGCCGAGGAACTGCCCCTCGACGCCC
TCGCGCGGGAGGCGGGAGTGTCGCCGCGCTCGCTCTCGCGGGCCTTCAATCGACGCTTCGGCATGAGCGTCCACCAATAC
ATCGTCTCGCGCCGGGTGTTGAAGGCCAAGGATCTGCTGGCCTCGACCGACCTGCCCATCGTTGAGGTGGCGCTGGAAGC
GGGATTCTCCAGCCAGAGCCATCTGTCCGCGGTATTCCGCAAGCAGACCGGTGTGACCCCGAGCCTGTTCCGCTCGGCGC
GGACCTGA

Upstream 100 bases:

>100_bases
TTTCACAAACTGGCCGCTGAAGAACAGATTTCGGTCAATCGACGACCAAAGGCTGTATCTGCCGCAGCCGGACGCAGGCG
CAGGCCACCGGGAGCCCGAA

Downstream 100 bases:

>100_bases
GGCGCGGGGTCACGGCCGCTGAAATGGCCTGGTCCCGATCGTGGACCAGGATGAAAAGTCACGCCCTCCGAAAGGAAGGG
CGCGATGGCTCGGATTACCT

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MRMHDIGSWPRNATLASSDGRGWANIQAALLAVDAWSGELAPIGNPCLGYCVNQPARIRRRVSGGGAIETATLRPRQFHL
IPALEASEWHRHGRSEMLTLYLRQEMLDAAAARACSAHVGRVELDVPLGVHDPLLEQLALAVLDILRHPEDAGSRFYADE
LAHAAYAHVVRGYTAVGRSSTFDGERDGAPERALRRVCELIVDRIAEELPLDALAREAGVSPRSLSRAFNRRFGMSVHQY
IVSRRVLKAKDLLASTDLPIVEVALEAGFSSQSHLSAVFRKQTGVTPSLFRSART

Sequences:

>Translated_295_residues
MRMHDIGSWPRNATLASSDGRGWANIQAALLAVDAWSGELAPIGNPCLGYCVNQPARIRRRVSGGGAIETATLRPRQFHL
IPALEASEWHRHGRSEMLTLYLRQEMLDAAAARACSAHVGRVELDVPLGVHDPLLEQLALAVLDILRHPEDAGSRFYADE
LAHAAYAHVVRGYTAVGRSSTFDGERDGAPERALRRVCELIVDRIAEELPLDALAREAGVSPRSLSRAFNRRFGMSVHQY
IVSRRVLKAKDLLASTDLPIVEVALEAGFSSQSHLSAVFRKQTGVTPSLFRSART
>Mature_295_residues
MRMHDIGSWPRNATLASSDGRGWANIQAALLAVDAWSGELAPIGNPCLGYCVNQPARIRRRVSGGGAIETATLRPRQFHL
IPALEASEWHRHGRSEMLTLYLRQEMLDAAAARACSAHVGRVELDVPLGVHDPLLEQLALAVLDILRHPEDAGSRFYADE
LAHAAYAHVVRGYTAVGRSSTFDGERDGAPERALRRVCELIVDRIAEELPLDALAREAGVSPRSLSRAFNRRFGMSVHQY
IVSRRVLKAKDLLASTDLPIVEVALEAGFSSQSHLSAVFRKQTGVTPSLFRSART

Specific function: This protein controls the expression of at least six genes that are involved in the transport and catabolism of L- arabinose. It regulates initiation of transcription of the araBAD operon and it also controls its own synthesis. The L-arabinose operon disp

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=101, Percent_Identity=35.6435643564356, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI171474011, Length=109, Percent_Identity=33.0275229357798, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787649, Length=104, Percent_Identity=40.3846153846154, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32341; Mature: 32341

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMHDIGSWPRNATLASSDGRGWANIQAALLAVDAWSGELAPIGNPCLGYCVNQPARIRR
CCCCCCCCCCCCCEEECCCCCCHHHHHHHHHEEECCCCCCCCCCCHHHHHHCCCHHHHHH
RVSGGGAIETATLRPRQFHLIPALEASEWHRHGRSEMLTLYLRQEMLDAAAARACSAHVG
HHCCCCCEEEEECCCCEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
RVELDVPLGVHDPLLEQLALAVLDILRHPEDAGSRFYADELAHAAYAHVVRGYTAVGRSS
EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
TFDGERDGAPERALRRVCELIVDRIAEELPLDALAREAGVSPRSLSRAFNRRFGMSVHQY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHCHHHHHH
IVSRRVLKAKDLLASTDLPIVEVALEAGFSSQSHLSAVFRKQTGVTPSLFRSART
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHCCC
>Mature Secondary Structure
MRMHDIGSWPRNATLASSDGRGWANIQAALLAVDAWSGELAPIGNPCLGYCVNQPARIRR
CCCCCCCCCCCCCEEECCCCCCHHHHHHHHHEEECCCCCCCCCCCHHHHHHCCCHHHHHH
RVSGGGAIETATLRPRQFHLIPALEASEWHRHGRSEMLTLYLRQEMLDAAAARACSAHVG
HHCCCCCEEEEECCCCEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
RVELDVPLGVHDPLLEQLALAVLDILRHPEDAGSRFYADELAHAAYAHVVRGYTAVGRSS
EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
TFDGERDGAPERALRRVCELIVDRIAEELPLDALAREAGVSPRSLSRAFNRRFGMSVHQY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHCHHHHHH
IVSRRVLKAKDLLASTDLPIVEVALEAGFSSQSHLSAVFRKQTGVTPSLFRSART
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]