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The map label for this gene is yhjC [C]

Identifier: 154244921

GI number: 154244921

Start: 1088541

End: 1089470

Strand: Direct

Name: yhjC [C]

Synonym: Xaut_0971

Alternate gene names: 154244921

Gene position: 1088541-1089470 (Clockwise)

Preceding gene: 154244913

Following gene: 154244923

Centisome position: 20.5

GC content: 70.97

Gene sequence:

>930_bases
ATGGACCGGATCGACGCCATGACCGCCTTCGTCACGGCCCTCGACGAAGGCAGCCTTGCCCGTGCCGCGCGACGGCTCGG
CCGCTCGCCGGCGGCGATCACGCGCGCGGTGGCTCAATTGGAGGAGCATCTCGGCACGCGCCTCCTCCACCGCACCACGC
GCGCCCTGCACCTGACCCAGACGGGCGAGCTTTACCTTGCCTCCTGCCGGGCCATCCTTGCCGATCTCGCCGAGGCGGAC
CTGCTCGCCGCCGGTGAGCGCACCGATCCCCGGGGGCTTCTTTCTGTCACCGCGCCGGTCATGTTCGGCCGCCTGCACGT
GGCGCCCGCGATCGAGGATCTCATCGAGGCTTATCCGGCCCTGGAGGCGCGGCTGCTGCTGGTGGACCGGGTGGTCCACC
TGATCGACGAAGGCCATGACGCGGCAGTGCGCATTGGTCATCTGCCGGATTCGAGCCTGGTCGCCACGCGGGTCGGGGAG
GTCCGGCGCGTGGTGTGCGCGAGCCCGGATTATCTTGCCACCCGCGGCACCCCCACCGTCCCGGCGGACCTGTCGACGCA
CCGGATCATCTCATTCTCGCAGGTCACCGAGAATGCGGTCTGGACGTTTTCTGCCGGTCCCTCGGGCGGGGCGCGCAAGC
AGGTGAGCGTGGCGGCCTGCTTCACCGTCAACACCGCCGATGCGGCCATCGCGGCCGCGGCGCGGGGGCGTGGCATCACC
CGCGTGCTGTCCTATCAGGTGGAGGAGGCTGTGGCCGACGGACGCCTGCGCATCCTGCTGGAGGCTTTCGAGGGAGAGCC
GCTGCCCGTGCACGTGGTCTATCCGGGCGTGCGCCTGCAGGCGGCGAAACTGCGCGCCTTCGTGGATTTCGTGGTGCCCC
GCCTGAGGGCACGGCTCGCCGCCCTGCCGGTCTCCTCGGGCCGGGCCTGA

Upstream 100 bases:

>100_bases
GGCTCTTCGTGGGGCGCCGTGGTGGAAAGCTAGGTCTTCCAGCCGTTGATCAGAATGGGTAGAGTTTGAAACCCATTATT
TCGAAAAGTGAAATCAAGGC

Downstream 100 bases:

>100_bases
ACGGTCTGCGCTCAGCCGGGCCTGCCGAGGCGCTCGCGCAGGAACTTCGTCATGAGCCGCACCTTCTTCGGCGTATAGCG
CCGGCTGGCATAGATGAGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MDRIDAMTAFVTALDEGSLARAARRLGRSPAAITRAVAQLEEHLGTRLLHRTTRALHLTQTGELYLASCRAILADLAEAD
LLAAGERTDPRGLLSVTAPVMFGRLHVAPAIEDLIEAYPALEARLLLVDRVVHLIDEGHDAAVRIGHLPDSSLVATRVGE
VRRVVCASPDYLATRGTPTVPADLSTHRIISFSQVTENAVWTFSAGPSGGARKQVSVAACFTVNTADAAIAAAARGRGIT
RVLSYQVEEAVADGRLRILLEAFEGEPLPVHVVYPGVRLQAAKLRAFVDFVVPRLRARLAALPVSSGRA

Sequences:

>Translated_309_residues
MDRIDAMTAFVTALDEGSLARAARRLGRSPAAITRAVAQLEEHLGTRLLHRTTRALHLTQTGELYLASCRAILADLAEAD
LLAAGERTDPRGLLSVTAPVMFGRLHVAPAIEDLIEAYPALEARLLLVDRVVHLIDEGHDAAVRIGHLPDSSLVATRVGE
VRRVVCASPDYLATRGTPTVPADLSTHRIISFSQVTENAVWTFSAGPSGGARKQVSVAACFTVNTADAAIAAAARGRGIT
RVLSYQVEEAVADGRLRILLEAFEGEPLPVHVVYPGVRLQAAKLRAFVDFVVPRLRARLAALPVSSGRA
>Mature_309_residues
MDRIDAMTAFVTALDEGSLARAARRLGRSPAAITRAVAQLEEHLGTRLLHRTTRALHLTQTGELYLASCRAILADLAEAD
LLAAGERTDPRGLLSVTAPVMFGRLHVAPAIEDLIEAYPALEARLLLVDRVVHLIDEGHDAAVRIGHLPDSSLVATRVGE
VRRVVCASPDYLATRGTPTVPADLSTHRIISFSQVTENAVWTFSAGPSGGARKQVSVAACFTVNTADAAIAAAARGRGIT
RVLSYQVEEAVADGRLRILLEAFEGEPLPVHVVYPGVRLQAAKLRAFVDFVVPRLRARLAALPVSSGRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=30.2405498281787, Blast_Score=147, Evalue=9e-37,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=33.3333333333333, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1789639, Length=274, Percent_Identity=30.2919708029197, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1789440, Length=296, Percent_Identity=27.3648648648649, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787128, Length=293, Percent_Identity=27.9863481228669, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=28.8659793814433, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=31.1643835616438, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1789173, Length=254, Percent_Identity=24.8031496062992, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33019; Mature: 33019

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIDAMTAFVTALDEGSLARAARRLGRSPAAITRAVAQLEEHLGTRLLHRTTRALHLTQ
CCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
TGELYLASCRAILADLAEADLLAAGERTDPRGLLSVTAPVMFGRLHVAPAIEDLIEAYPA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LEARLLLVDRVVHLIDEGHDAAVRIGHLPDSSLVATRVGEVRRVVCASPDYLATRGTPTV
HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCC
PADLSTHRIISFSQVTENAVWTFSAGPSGGARKQVSVAACFTVNTADAAIAAAARGRGIT
CCCCCCCCEEEHHHHCCCEEEEEECCCCCCCCCEEEEEEEEEECCHHHHHHHHHCCCCHH
RVLSYQVEEAVADGRLRILLEAFEGEPLPVHVVYPGVRLQAAKLRAFVDFVVPRLRARLA
HHHHHHHHHHHHCCHHEEEEEHHCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHH
ALPVSSGRA
HCCCCCCCC
>Mature Secondary Structure
MDRIDAMTAFVTALDEGSLARAARRLGRSPAAITRAVAQLEEHLGTRLLHRTTRALHLTQ
CCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
TGELYLASCRAILADLAEADLLAAGERTDPRGLLSVTAPVMFGRLHVAPAIEDLIEAYPA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LEARLLLVDRVVHLIDEGHDAAVRIGHLPDSSLVATRVGEVRRVVCASPDYLATRGTPTV
HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCC
PADLSTHRIISFSQVTENAVWTFSAGPSGGARKQVSVAACFTVNTADAAIAAAARGRGIT
CCCCCCCCEEEHHHHCCCEEEEEECCCCCCCCCEEEEEEEEEECCHHHHHHHHHCCCCHH
RVLSYQVEEAVADGRLRILLEAFEGEPLPVHVVYPGVRLQAAKLRAFVDFVVPRLRARLA
HHHHHHHHHHHHCCHHEEEEEHHCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHH
ALPVSSGRA
HCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]