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The map label for this gene is xerD [C]

Identifier: 154244480

GI number: 154244480

Start: 590586

End: 591809

Strand: Direct

Name: xerD [C]

Synonym: Xaut_0524

Alternate gene names: 154244480

Gene position: 590586-591809 (Clockwise)

Preceding gene: 154244477

Following gene: 154244481

Centisome position: 11.12

GC content: 59.89

Gene sequence:

>1224_bases
ATGGCAGACATCAGAAAAAGAGCGGGAGCCAAAGGCGCAACATATCAGGTTCGGTATGTTGTCAACGCCGGTCGCGGATA
TTCCTATGCCAGCTTTCGGACCCTGAAAGAGGCCCGCGCCTTCTCCGAAAATCTGGGCTCGCTCGTCGCGGCCCCTGATA
GTGGCGTCGTCAGCGTCGCAGACGCGGTGGACCGCTGGCTTGCCATTTGCGAGAGGACGGGGCGTGACGGACGAGAAAAG
GTGGAAGCCGAGACCTACAAGGAATACGCGCGGCGCGCAAAGGTCATGAAAGAATATTCATGGGCGAAACTTCTGCATGA
GCTTGTCCCGCCTGATATCGTCGCCTTCCGGACGTGGCTGCTGGAAAACAAGACGCGCGATCTTGCCCGGCGCGCTCTGT
CGTCCTTTCACTCCGTGCTCATCGAGATGAAGCGCGAAGGCCGGCTGACGACCGATCCCGCCGCTGGCGTCACCATCAAG
GCCGGAGGACGTTACGAGGACGAGGACGGCGAGGTCGAAATACCGACCGACGATGAGGTGCGGGCCATCTATGCCGCAGC
TGACAGACTCGCCACGAAGAACGCCTATATGGCGGAGCGTTGGGCCCGCTATCGCCCGCTGGTCTATCTCGCCGGATTCA
CGGGTATGCGTCCATCCGAGTATCGCGGGTTGTCGTGGAAGCAGATCGGCGGCGACCACATTCGCGTAACTCAGCGCGCC
GACAAGACTGGCCAGATCGGGCCGGTCAAATCCCGTGCCGGGCGCCGGACGCTCTACATTCCATCCTTTCTTGCCGAAAT
GCTGGAGGTCTGGCGTTCCGAATGCGCGGCCTCAGCTCTTGATCTGGTATTTCCGACGTCATCCGGTCAGCCTATGGCGC
TGGTCAATTTCAGGGCGGGCGGCTGGGACCCGCTCATGAAGGAGGCGTGCCTGGTGGATCGGATCGAGCGTGACGGAAAA
CAGATCGATGTTCCGCGCTACACACCCTATGCCCTGCGGCACTACTTCGCGTCAAAGCTGATCGAGGGTGGGTACGATCT
GAAGTTCATCCAGCAGGCGATGGGACATTCCAAGATCGAAATCACGTTCAATGTTTATGGCCACCTCATCCGCGGCCGGG
AAGACCATCACCGGCAAAGCGCGGAAAAACTGGCCCATCAGATACTGGGGCCCGTCGCGCGTTGTGGCGAATTTGTGGCA
AATTCTCTGGAAGCCCCAGAATAG

Upstream 100 bases:

>100_bases
CTACCAGCAGCTTCAGGCTGAAGCCGAAAAATATCATGGAAGTAAAAATTGAATTTTGTTCTTTATTTGTTCCTCATGTT
GCTATAAATACAATTATATA

Downstream 100 bases:

>100_bases
CTGGCGTTCTTTCAGCCTTCCAAGCTGGCTATGAGGGTTCGATTCCCTTCACCCGCTCCATTGTTAAACTCAATCACTTA
GACCATGATGCTTTCCAATA

Product: integrase family protein

Products: NA

Alternate protein names: Integrase; Phage Integrase Family Protein; Phage Integrase; Prophage Integrase; TraSAIntegrase Fusion Protein; Phage Integrase Protein; Prophage Lp4 Integrase; Phage Integrase Family Site Specific Recombinase

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MADIRKRAGAKGATYQVRYVVNAGRGYSYASFRTLKEARAFSENLGSLVAAPDSGVVSVADAVDRWLAICERTGRDGREK
VEAETYKEYARRAKVMKEYSWAKLLHELVPPDIVAFRTWLLENKTRDLARRALSSFHSVLIEMKREGRLTTDPAAGVTIK
AGGRYEDEDGEVEIPTDDEVRAIYAAADRLATKNAYMAERWARYRPLVYLAGFTGMRPSEYRGLSWKQIGGDHIRVTQRA
DKTGQIGPVKSRAGRRTLYIPSFLAEMLEVWRSECAASALDLVFPTSSGQPMALVNFRAGGWDPLMKEACLVDRIERDGK
QIDVPRYTPYALRHYFASKLIEGGYDLKFIQQAMGHSKIEITFNVYGHLIRGREDHHRQSAEKLAHQILGPVARCGEFVA
NSLEAPE

Sequences:

>Translated_407_residues
MADIRKRAGAKGATYQVRYVVNAGRGYSYASFRTLKEARAFSENLGSLVAAPDSGVVSVADAVDRWLAICERTGRDGREK
VEAETYKEYARRAKVMKEYSWAKLLHELVPPDIVAFRTWLLENKTRDLARRALSSFHSVLIEMKREGRLTTDPAAGVTIK
AGGRYEDEDGEVEIPTDDEVRAIYAAADRLATKNAYMAERWARYRPLVYLAGFTGMRPSEYRGLSWKQIGGDHIRVTQRA
DKTGQIGPVKSRAGRRTLYIPSFLAEMLEVWRSECAASALDLVFPTSSGQPMALVNFRAGGWDPLMKEACLVDRIERDGK
QIDVPRYTPYALRHYFASKLIEGGYDLKFIQQAMGHSKIEITFNVYGHLIRGREDHHRQSAEKLAHQILGPVARCGEFVA
NSLEAPE
>Mature_406_residues
ADIRKRAGAKGATYQVRYVVNAGRGYSYASFRTLKEARAFSENLGSLVAAPDSGVVSVADAVDRWLAICERTGRDGREKV
EAETYKEYARRAKVMKEYSWAKLLHELVPPDIVAFRTWLLENKTRDLARRALSSFHSVLIEMKREGRLTTDPAAGVTIKA
GGRYEDEDGEVEIPTDDEVRAIYAAADRLATKNAYMAERWARYRPLVYLAGFTGMRPSEYRGLSWKQIGGDHIRVTQRAD
KTGQIGPVKSRAGRRTLYIPSFLAEMLEVWRSECAASALDLVFPTSSGQPMALVNFRAGGWDPLMKEACLVDRIERDGKQ
IDVPRYTPYALRHYFASKLIEGGYDLKFIQQAMGHSKIEITFNVYGHLIRGREDHHRQSAEKLAHQILGPVARCGEFVAN
SLEAPE

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45772; Mature: 45640

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADIRKRAGAKGATYQVRYVVNAGRGYSYASFRTLKEARAFSENLGSLVAAPDSGVVSVA
CCCHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCHHH
DAVDRWLAICERTGRDGREKVEAETYKEYARRAKVMKEYSWAKLLHELVPPDIVAFRTWL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LENKTRDLARRALSSFHSVLIEMKREGRLTTDPAAGVTIKAGGRYEDEDGEVEIPTDDEV
HHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCEECCCCCHH
RAIYAAADRLATKNAYMAERWARYRPLVYLAGFTGMRPSEYRGLSWKQIGGDHIRVTQRA
HHHHHHHHHHHHCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHCCCCEEEEEECC
DKTGQIGPVKSRAGRRTLYIPSFLAEMLEVWRSECAASALDLVFPTSSGQPMALVNFRAG
CCCCCCCCCHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEECCC
GWDPLMKEACLVDRIERDGKQIDVPRYTPYALRHYFASKLIEGGYDLKFIQQAMGHSKIE
CCCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEE
ITFNVYGHLIRGREDHHRQSAEKLAHQILGPVARCGEFVANSLEAPE
EEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ADIRKRAGAKGATYQVRYVVNAGRGYSYASFRTLKEARAFSENLGSLVAAPDSGVVSVA
CCHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCHHH
DAVDRWLAICERTGRDGREKVEAETYKEYARRAKVMKEYSWAKLLHELVPPDIVAFRTWL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LENKTRDLARRALSSFHSVLIEMKREGRLTTDPAAGVTIKAGGRYEDEDGEVEIPTDDEV
HHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCEECCCCCHH
RAIYAAADRLATKNAYMAERWARYRPLVYLAGFTGMRPSEYRGLSWKQIGGDHIRVTQRA
HHHHHHHHHHHHCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHCCCCEEEEEECC
DKTGQIGPVKSRAGRRTLYIPSFLAEMLEVWRSECAASALDLVFPTSSGQPMALVNFRAG
CCCCCCCCCHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEECCC
GWDPLMKEACLVDRIERDGKQIDVPRYTPYALRHYFASKLIEGGYDLKFIQQAMGHSKIE
CCCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEE
ITFNVYGHLIRGREDHHRQSAEKLAHQILGPVARCGEFVANSLEAPE
EEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA