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The map label for this gene is yjiR [C]

Identifier: 154244371

GI number: 154244371

Start: 445454

End: 446836

Strand: Direct

Name: yjiR [C]

Synonym: Xaut_0414

Alternate gene names: 154244371

Gene position: 445454-446836 (Clockwise)

Preceding gene: 154244370

Following gene: 154244374

Centisome position: 8.39

GC content: 72.74

Gene sequence:

>1383_bases
ATGGCGAGGGGAGACAGCACGTCGTCATGGATCCGCCCGCTCGATCCGGCCGGCGGGCTGCGCTACCTGCAGATCGTGGA
TCTCGTCGCCGAGGCCGTCGCCGCCGGGCGGCTGCGTCCCGGTGACCGCCTGCCGCCGCAGCGCAAGCTGGCCGACCAGT
TGGGCGTGGACCTGACCACCGTCACCCGCGCCTATGCCGAGGCGCGGCGCCGCAACCTGATCGACGCGGTGACGGGGCGC
GGCTCCTTCATCGCGGTGCGGCGGGAGCCGGGCGGGCCGCTGATGGACCTCAGCATGAATATTCCGCCGGCCCCCAAGGG
CATCCGGCTGGCGGACCTCATGCAGCGGGGGATCAGCTCGGTGCTGGCGCGCGCCGATTCCAATCTGCTCATGAGCTATC
ACGTGGGTGCCGGCTCTCTGGCGGACCGGATGGCTGCCGCCGCGTGGCTCGAACCGCTGCTGGGCGCGGTGGATCCGCAG
CGGCTGGTGGTGGCCCCCGGCGCCCAGTCGGCGCTGTCCGCCCTTGTCGGCAGCCTGGTCGGGCGGGAGGGCGTCATCCT
CGCCGAGCCGCTGGCCTATCCCGGCCTGCTGGCGGCGGCGCGACACTGGCAGGTGCGCCCCGTTGCCGTGCCCGCGGACG
CGGAGGGGCCGCTGCCGGAGGGTCTCGAACAGGCGGCGCGGAACCATGGGGCGCGGGTGTTCTGCCTCACCCCCACCATC
CAGAATCCCACCGCCGTGACGCTTTCCCCGGCGCGACGGTCTGCGCTTGCCCGCGTGGCGGCGGCGCTCGATCTCATCCT
CATCGAGGACGACCCCTACGCCCTGCTGGCGCCCGAAGCGCCGCCGCCCATCGCGACCCTGGCGCCCGAGCGCACCTATT
ATGTCTCCACCTTGTCGAAGGTGCTGACGCCCGGCCTGCGCACAGCCTTCGTGGTGGTGCCGGACGGCACCGCGCCGGAT
GCGTTGGTCAGCGCCCTGCGGGCCCATGTGCTGATGCCGGCCCCGCTCATGACGGCGCTGGCGACGGACTGGATCCGCAG
CGGCGAGGCTGCTCAGTTGCTCAAGGGTGTGCGCGAGGAGGCCGCCGCCCGACAGGAGATGGCCCGGCACCTGTTTCCAT
CGGCCCGGTCGCACCGCAGCGGGCTGCACCTGTGGCAACCCCTGCCGGCGCATTGGGACCGCTACCGCCTGGTGGAGACG
GCGCGGCGCGAGGGGCTGGGGGTTACGGCATCGGACGCCTTCAGCGTCGAGGCTCGCCCGCCGGATGCGGTGCGCATCTC
CATCGGCGGTGTTCCGGACCGGGCAAGGCTCAACGCGGCGCTGGAGAAGCTCGCCGCCATCATGAGCACCCTGCACGCGC
GCTATCAGGACGGGGTGGTCTGA

Upstream 100 bases:

>100_bases
CGAGCCGGGAGCAGGCTGGGGCGGCCGCTATTGCCTCGCCCGGGATGGTGCGGCTATGTTTGCGTACAATATTTGAAATT
GTATGGCTCGTGGGGCTGCC

Downstream 100 bases:

>100_bases
GGCGCCGGGATCAGGGCAGCGGCCGGGGCGCGGCGACTTCGTCCTTGACGGTCACGCGCTGGCCTTCCTCCGCCTTGTAG
AAGAATTGCGAGGCTACCAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 459

Protein sequence:

>460_residues
MARGDSTSSWIRPLDPAGGLRYLQIVDLVAEAVAAGRLRPGDRLPPQRKLADQLGVDLTTVTRAYAEARRRNLIDAVTGR
GSFIAVRREPGGPLMDLSMNIPPAPKGIRLADLMQRGISSVLARADSNLLMSYHVGAGSLADRMAAAAWLEPLLGAVDPQ
RLVVAPGAQSALSALVGSLVGREGVILAEPLAYPGLLAAARHWQVRPVAVPADAEGPLPEGLEQAARNHGARVFCLTPTI
QNPTAVTLSPARRSALARVAAALDLILIEDDPYALLAPEAPPPIATLAPERTYYVSTLSKVLTPGLRTAFVVVPDGTAPD
ALVSALRAHVLMPAPLMTALATDWIRSGEAAQLLKGVREEAAARQEMARHLFPSARSHRSGLHLWQPLPAHWDRYRLVET
ARREGLGVTASDAFSVEARPPDAVRISIGGVPDRARLNAALEKLAAIMSTLHARYQDGVV

Sequences:

>Translated_460_residues
MARGDSTSSWIRPLDPAGGLRYLQIVDLVAEAVAAGRLRPGDRLPPQRKLADQLGVDLTTVTRAYAEARRRNLIDAVTGR
GSFIAVRREPGGPLMDLSMNIPPAPKGIRLADLMQRGISSVLARADSNLLMSYHVGAGSLADRMAAAAWLEPLLGAVDPQ
RLVVAPGAQSALSALVGSLVGREGVILAEPLAYPGLLAAARHWQVRPVAVPADAEGPLPEGLEQAARNHGARVFCLTPTI
QNPTAVTLSPARRSALARVAAALDLILIEDDPYALLAPEAPPPIATLAPERTYYVSTLSKVLTPGLRTAFVVVPDGTAPD
ALVSALRAHVLMPAPLMTALATDWIRSGEAAQLLKGVREEAAARQEMARHLFPSARSHRSGLHLWQPLPAHWDRYRLVET
ARREGLGVTASDAFSVEARPPDAVRISIGGVPDRARLNAALEKLAAIMSTLHARYQDGVV
>Mature_459_residues
ARGDSTSSWIRPLDPAGGLRYLQIVDLVAEAVAAGRLRPGDRLPPQRKLADQLGVDLTTVTRAYAEARRRNLIDAVTGRG
SFIAVRREPGGPLMDLSMNIPPAPKGIRLADLMQRGISSVLARADSNLLMSYHVGAGSLADRMAAAAWLEPLLGAVDPQR
LVVAPGAQSALSALVGSLVGREGVILAEPLAYPGLLAAARHWQVRPVAVPADAEGPLPEGLEQAARNHGARVFCLTPTIQ
NPTAVTLSPARRSALARVAAALDLILIEDDPYALLAPEAPPPIATLAPERTYYVSTLSKVLTPGLRTAFVVVPDGTAPDA
LVSALRAHVLMPAPLMTALATDWIRSGEAAQLLKGVREEAAARQEMARHLFPSARSHRSGLHLWQPLPAHWDRYRLVETA
RREGLGVTASDAFSVEARPPDAVRISIGGVPDRARLNAALEKLAAIMSTLHARYQDGVV

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790797, Length=447, Percent_Identity=23.489932885906, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787710, Length=436, Percent_Identity=23.8532110091743, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 48952; Mature: 48821

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARGDSTSSWIRPLDPAGGLRYLQIVDLVAEAVAAGRLRPGDRLPPQRKLADQLGVDLTT
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHH
VTRAYAEARRRNLIDAVTGRGSFIAVRREPGGPLMDLSMNIPPAPKGIRLADLMQRGISS
HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH
VLARADSNLLMSYHVGAGSLADRMAAAAWLEPLLGAVDPQRLVVAPGAQSALSALVGSLV
HHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHH
GREGVILAEPLAYPGLLAAARHWQVRPVAVPADAEGPLPEGLEQAARNHGARVFCLTPTI
CCCCEEEECCCCCCHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCC
QNPTAVTLSPARRSALARVAAALDLILIEDDPYALLAPEAPPPIATLAPERTYYVSTLSK
CCCCEEEECHHHHHHHHHHHHHHEEEEECCCCCEEECCCCCCCCCCCCCCCHHHHHHHHH
VLTPGLRTAFVVVPDGTAPDALVSALRAHVLMPAPLMTALATDWIRSGEAAQLLKGVREE
HHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
AAARQEMARHLFPSARSHRSGLHLWQPLPAHWDRYRLVETARREGLGVTASDAFSVEARP
HHHHHHHHHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCC
PDAVRISIGGVPDRARLNAALEKLAAIMSTLHARYQDGVV
CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ARGDSTSSWIRPLDPAGGLRYLQIVDLVAEAVAAGRLRPGDRLPPQRKLADQLGVDLTT
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHH
VTRAYAEARRRNLIDAVTGRGSFIAVRREPGGPLMDLSMNIPPAPKGIRLADLMQRGISS
HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH
VLARADSNLLMSYHVGAGSLADRMAAAAWLEPLLGAVDPQRLVVAPGAQSALSALVGSLV
HHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHH
GREGVILAEPLAYPGLLAAARHWQVRPVAVPADAEGPLPEGLEQAARNHGARVFCLTPTI
CCCCEEEECCCCCCHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCC
QNPTAVTLSPARRSALARVAAALDLILIEDDPYALLAPEAPPPIATLAPERTYYVSTLSK
CCCCEEEECHHHHHHHHHHHHHHEEEEECCCCCEEECCCCCCCCCCCCCCCHHHHHHHHH
VLTPGLRTAFVVVPDGTAPDALVSALRAHVLMPAPLMTALATDWIRSGEAAQLLKGVREE
HHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
AAARQEMARHLFPSARSHRSGLHLWQPLPAHWDRYRLVETARREGLGVTASDAFSVEARP
HHHHHHHHHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCC
PDAVRISIGGVPDRARLNAALEKLAAIMSTLHARYQDGVV
CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]