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The map label for this gene is cph2 [H]

Identifier: 154244359

GI number: 154244359

Start: 430597

End: 433197

Strand: Direct

Name: cph2 [H]

Synonym: Xaut_0402

Alternate gene names: 154244359

Gene position: 430597-433197 (Clockwise)

Preceding gene: 154244346

Following gene: 154244363

Centisome position: 8.11

GC content: 71.78

Gene sequence:

>2601_bases
ATGGGACCTCTGGACCGGAAGCTGCTGAACTGGCGGGCTGGCGCGGTGGCGGCGGCCATCTTCGCAGCGGGCCTTGCGGC
GACGTGGGCGGCCGGGGCGCTGGCGCGGCACATCATCTTCTCGAACACCCAGAGCCGGTTTTCCGCCGATACCGCCGAGA
TGGCCGCCGCAGTGGGCGAGCGGGTGCGCGCCCATGCCGAAGTGCTGGTGAGCATGCAGGGGCTCTATGCCTCGGTGGGG
CGCATCGATCGCGCCCAGTTCCAGCGCTACGTGGACGTGCTGGATCTGGTGCGGCGCTATCCGGGCTTCGAGGCGCTCCA
GGTGCTGCGCCATGTGACCCCGGACGGCCTCGACGCCTTTGTCGCAGAGGTGCGCGCCGATACCAGCGTCGATCCGCGCG
GCCAACCCAATTTCACCGTCCATCCGGCCGGGCCGCGCCCGGTCTATAACGTCATCCAGTTCGTGGAGCCCATGCGGGGC
AACGAGCGGGTGCTGGGCTTCGACGTGGGCTCGAACCCGGCGCAGCTCGACAGCCTGGTGCGCGGCGGCGACACCGGGCG
CATCGTCGCCACGCCGCCGGTCAAGCTGATCCAGGACGAGAGTGGCGGGCTCGGCTTCATCCTGCGCGCGCCGCTCTACA
AGGCGGGGGAGCTGACCGCCACCGTGGAGCAGCGCCGCGCTGCCCTGCTGGGCTTTGCCGCCGCCGTCTATCGCGCCAAC
GACCTCATGCGAGGGGTGCTCGACGCCCGCACCCTCCAGCAGATGAACGTGCGGGTGCTCGATCGCGGCTATGCCCGGGT
GTCAGCGGAGGGGGGGGTCACCGCCGTGCCGGCGGACCCGGCGGCCGCCGCCGTGCTGCTGTTCGACAGCCGCGAACCGA
ACCTCCAGGTGGTGACGCCGGTGGCGGAGGTGCCCATCGGCATCGCCGCCGAGCGATCTCTGGTGGTGGGCGACCGGCTG
TGGCTGCTCCATTTCGCCGCGCGGGCGGGGTCGAGCTACGAGGCCGACCAGACCATTCCCGCCGTGGTGCTGGCCAGCGG
CTCGGTCATCAGCCTGCTGCTGGCGGGCATGGCCTTGTCGCTGATGCGCGCAGGCCGGCTGTCCCGCAGCCTCGGCACGC
TCGATGCCGAGCAGCGGGCGCTGGTGGAAAATCCACTGGCCGGCATCCTGTTCACCCACGGGCGCGCGGTGTTGCGCGGC
AATCACCGCATGGGGGAGCTGTGCGGCCGCCCACCGGAGGCCCTGGCCGGCCTCGACCTCGCCGATCTCGCGGCGCGGCC
GGAGGATGTTGCCGCCTTCGAGGCGGCGCTGGCCGCCATCGCCGCCGGCGGAACCGCGGCGCTCGAACTGCACCTCGATT
GTCCCGATCGCCCGCCCGTGGTGGTGGATGCCTTCGGGCGTCCCCTGTTCCTCCAGGGGCGACGGGGCGACGGGAACGTG
CTGTGGGTGATGCAGGACAAGACCGACGCGCTCGCCGTTGAGGCCGAACGGCGCAGCCACGAGCGCGCGCTGCGCGAGGC
CAATGCCGATCTCACCCGGCTGGTCGATGCCGCCGAGGCCCGCACCCGCGAGATCACCCTTCTCGCTGAGCTGAGCTCCC
TCCTGCAATCCTGCCAGTCCACGGACGAGGTCTTCGCCTCGGTCCAGGCCTATGCGTCGCGGCTGTTTCCGGGCGAGGCG
GGCGCCCTCTACGTGCTCAATCGCAAGCGGGCGCAGGTGGTGCGCGGCGGCCGCTGGGGCGCGCCGAAGGCCGATGTGGC
CTCCTTCACCCCGGACGCCTGCTGGGCGTTGCGCCGGGGGCAGGCCTTCCCAGTCTCCGAGGCGAGCCGGGGTCTCGTCT
GCGATCATGTGGCGGGCGCCGTCGGCGATGCCGGCGTGCCTGACCATGTGTGCCAGCCGCTGATCGCGCGCAACCGCCTG
CTGGGCTTGTTCTATCGCGAGCCGGCGGCGGAGGGGGCCAGCGCCTCGGCCCTCCAGCTTTCCACCATGCTGGCCGAGCA
GGTGTCCCTCGCCCTCGCCAATATCGACCTGCGCGAGCAATTGCGCGGTCAGGCCCTGCGCGACCCCCTCACCGGCCTCG
GCAACCGGCGCTTTGTGGAGGATGCGCTGGCCCTCCAGATCGCCGGTGTCACGGGGGATGGGCGGTCGCTGTCGGTGGCG
CTCATCGACCTCGACCATTTCAAGCAGGTCAACGACACCCACAGCCACGAGGCGGGGGACGCGGTGTTGCGCGCCATCGG
CGACGTGTTGCGTGCCAACATCCGCAAGGGCGACATCATCGCCCGCTACGGCGGCGAGGAGTTCCTGCTGCTGCTGCCCA
ATACCGCGCCGGACGGGGCGCTGGCGGTGGCGAACCACCTGCTCCAGGCGATCCGCAGCCTGCGGGTGCTGTGGTCGGGC
GGGGTGCTGGAAGGCATCACCGCGTCCATCGGCGTGGCGACTTTCCCCGATCACGTCAGCCGGCCGGACGACCTGATCGT
CTCAGCCGACGCGGCCCTCTACCGCGCCAAGGCGCTGGGGCGCGACCAGGTGGTGGGGAGCCCCGCCGCGCCCGATGCGG
CGGGGCGGCCGGACCTGTCGCCCCTGCATTCGGCGGAGTGA

Upstream 100 bases:

>100_bases
CGGTGCGATAGTGGTAATTGTGCACGGTGCGGCCTTCTGGTTTATATGCAGGCTTCCGTTTGCGCCGCAGCCGCGCCATT
CCGGGGGATAAGCGGGCGCC

Downstream 100 bases:

>100_bases
GGCGTCCCATCACGGGTGAAGGCGTCGACCCCTGAGCATCGCATGCGCGCCGGATCCGGCATGGAAACGTGCGGCGCCCG
CGCAACTGCCGTCTTCGCTG

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 866; Mature: 865

Protein sequence:

>866_residues
MGPLDRKLLNWRAGAVAAAIFAAGLAATWAAGALARHIIFSNTQSRFSADTAEMAAAVGERVRAHAEVLVSMQGLYASVG
RIDRAQFQRYVDVLDLVRRYPGFEALQVLRHVTPDGLDAFVAEVRADTSVDPRGQPNFTVHPAGPRPVYNVIQFVEPMRG
NERVLGFDVGSNPAQLDSLVRGGDTGRIVATPPVKLIQDESGGLGFILRAPLYKAGELTATVEQRRAALLGFAAAVYRAN
DLMRGVLDARTLQQMNVRVLDRGYARVSAEGGVTAVPADPAAAAVLLFDSREPNLQVVTPVAEVPIGIAAERSLVVGDRL
WLLHFAARAGSSYEADQTIPAVVLASGSVISLLLAGMALSLMRAGRLSRSLGTLDAEQRALVENPLAGILFTHGRAVLRG
NHRMGELCGRPPEALAGLDLADLAARPEDVAAFEAALAAIAAGGTAALELHLDCPDRPPVVVDAFGRPLFLQGRRGDGNV
LWVMQDKTDALAVEAERRSHERALREANADLTRLVDAAEARTREITLLAELSSLLQSCQSTDEVFASVQAYASRLFPGEA
GALYVLNRKRAQVVRGGRWGAPKADVASFTPDACWALRRGQAFPVSEASRGLVCDHVAGAVGDAGVPDHVCQPLIARNRL
LGLFYREPAAEGASASALQLSTMLAEQVSLALANIDLREQLRGQALRDPLTGLGNRRFVEDALALQIAGVTGDGRSLSVA
LIDLDHFKQVNDTHSHEAGDAVLRAIGDVLRANIRKGDIIARYGGEEFLLLLPNTAPDGALAVANHLLQAIRSLRVLWSG
GVLEGITASIGVATFPDHVSRPDDLIVSADAALYRAKALGRDQVVGSPAAPDAAGRPDLSPLHSAE

Sequences:

>Translated_866_residues
MGPLDRKLLNWRAGAVAAAIFAAGLAATWAAGALARHIIFSNTQSRFSADTAEMAAAVGERVRAHAEVLVSMQGLYASVG
RIDRAQFQRYVDVLDLVRRYPGFEALQVLRHVTPDGLDAFVAEVRADTSVDPRGQPNFTVHPAGPRPVYNVIQFVEPMRG
NERVLGFDVGSNPAQLDSLVRGGDTGRIVATPPVKLIQDESGGLGFILRAPLYKAGELTATVEQRRAALLGFAAAVYRAN
DLMRGVLDARTLQQMNVRVLDRGYARVSAEGGVTAVPADPAAAAVLLFDSREPNLQVVTPVAEVPIGIAAERSLVVGDRL
WLLHFAARAGSSYEADQTIPAVVLASGSVISLLLAGMALSLMRAGRLSRSLGTLDAEQRALVENPLAGILFTHGRAVLRG
NHRMGELCGRPPEALAGLDLADLAARPEDVAAFEAALAAIAAGGTAALELHLDCPDRPPVVVDAFGRPLFLQGRRGDGNV
LWVMQDKTDALAVEAERRSHERALREANADLTRLVDAAEARTREITLLAELSSLLQSCQSTDEVFASVQAYASRLFPGEA
GALYVLNRKRAQVVRGGRWGAPKADVASFTPDACWALRRGQAFPVSEASRGLVCDHVAGAVGDAGVPDHVCQPLIARNRL
LGLFYREPAAEGASASALQLSTMLAEQVSLALANIDLREQLRGQALRDPLTGLGNRRFVEDALALQIAGVTGDGRSLSVA
LIDLDHFKQVNDTHSHEAGDAVLRAIGDVLRANIRKGDIIARYGGEEFLLLLPNTAPDGALAVANHLLQAIRSLRVLWSG
GVLEGITASIGVATFPDHVSRPDDLIVSADAALYRAKALGRDQVVGSPAAPDAAGRPDLSPLHSAE
>Mature_865_residues
GPLDRKLLNWRAGAVAAAIFAAGLAATWAAGALARHIIFSNTQSRFSADTAEMAAAVGERVRAHAEVLVSMQGLYASVGR
IDRAQFQRYVDVLDLVRRYPGFEALQVLRHVTPDGLDAFVAEVRADTSVDPRGQPNFTVHPAGPRPVYNVIQFVEPMRGN
ERVLGFDVGSNPAQLDSLVRGGDTGRIVATPPVKLIQDESGGLGFILRAPLYKAGELTATVEQRRAALLGFAAAVYRAND
LMRGVLDARTLQQMNVRVLDRGYARVSAEGGVTAVPADPAAAAVLLFDSREPNLQVVTPVAEVPIGIAAERSLVVGDRLW
LLHFAARAGSSYEADQTIPAVVLASGSVISLLLAGMALSLMRAGRLSRSLGTLDAEQRALVENPLAGILFTHGRAVLRGN
HRMGELCGRPPEALAGLDLADLAARPEDVAAFEAALAAIAAGGTAALELHLDCPDRPPVVVDAFGRPLFLQGRRGDGNVL
WVMQDKTDALAVEAERRSHERALREANADLTRLVDAAEARTREITLLAELSSLLQSCQSTDEVFASVQAYASRLFPGEAG
ALYVLNRKRAQVVRGGRWGAPKADVASFTPDACWALRRGQAFPVSEASRGLVCDHVAGAVGDAGVPDHVCQPLIARNRLL
GLFYREPAAEGASASALQLSTMLAEQVSLALANIDLREQLRGQALRDPLTGLGNRRFVEDALALQIAGVTGDGRSLSVAL
IDLDHFKQVNDTHSHEAGDAVLRAIGDVLRANIRKGDIIARYGGEEFLLLLPNTAPDGALAVANHLLQAIRSLRVLWSGG
VLEGITASIGVATFPDHVSRPDDLIVSADAALYRAKALGRDQVVGSPAAPDAAGRPDLSPLHSAE

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=253, Percent_Identity=30.4347826086957, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI87081881, Length=174, Percent_Identity=40.8045977011494, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1787262, Length=169, Percent_Identity=34.3195266272189, Blast_Score=100, Evalue=6e-22,
Organism=Escherichia coli, GI1788381, Length=165, Percent_Identity=35.1515151515151, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1786584, Length=187, Percent_Identity=31.5508021390374, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI1787541, Length=167, Percent_Identity=36.5269461077844, Blast_Score=93, Evalue=7e-20,
Organism=Escherichia coli, GI1787802, Length=182, Percent_Identity=31.8681318681319, Blast_Score=83, Evalue=9e-17,
Organism=Escherichia coli, GI87082007, Length=176, Percent_Identity=34.6590909090909, Blast_Score=80, Evalue=6e-16,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=32.5, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87081977, Length=169, Percent_Identity=32.5443786982249, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=104, Percent_Identity=31.7307692307692, Blast_Score=70, Evalue=7e-13,
Organism=Escherichia coli, GI1788085, Length=182, Percent_Identity=32.967032967033, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 91887; Mature: 91756

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: PS50839 CHASE ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGPLDRKLLNWRAGAVAAAIFAAGLAATWAAGALARHIIFSNTQSRFSADTAEMAAAVGE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHH
RVRAHAEVLVSMQGLYASVGRIDRAQFQRYVDVLDLVRRYPGFEALQVLRHVTPDGLDAF
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHH
VAEVRADTSVDPRGQPNFTVHPAGPRPVYNVIQFVEPMRGNERVLGFDVGSNPAQLDSLV
HHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHH
RGGDTGRIVATPPVKLIQDESGGLGFILRAPLYKAGELTATVEQRRAALLGFAAAVYRAN
HCCCCCCEEECCCCEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
DLMRGVLDARTLQQMNVRVLDRGYARVSAEGGVTAVPADPAAAAVLLFDSREPNLQVVTP
HHHHHHHHHHHHHHHCHHHEECCCEEEECCCCEEECCCCCCCEEEEEEECCCCCEEEECC
VAEVPIGIAAERSLVVGDRLWLLHFAARAGSSYEADQTIPAVVLASGSVISLLLAGMALS
HHHCCCCEECCCEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
LMRAGRLSRSLGTLDAEQRALVENPLAGILFTHGRAVLRGNHRMGELCGRPPEALAGLDL
HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHCCEEEEECCCCHHHHHCCCHHHHHCCCH
ADLAARPEDVAAFEAALAAIAAGGTAALELHLDCPDRPPVVVDAFGRPLFLQGRRGDGNV
HHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEECCCCCEEEECCCCCCCE
LWVMQDKTDALAVEAERRSHERALREANADLTRLVDAAEARTREITLLAELSSLLQSCQS
EEEEECCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TDEVFASVQAYASRLFPGEAGALYVLNRKRAQVVRGGRWGAPKADVASFTPDACWALRRG
HHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCC
QAFPVSEASRGLVCDHVAGAVGDAGVPDHVCQPLIARNRLLGLFYREPAAEGASASALQL
CCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHH
STMLAEQVSLALANIDLREQLRGQALRDPLTGLGNRRFVEDALALQIAGVTGDGRSLSVA
HHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHCCCCCHHHHHHHEEEEEEECCCCCEEEEE
LIDLDHFKQVNDTHSHEAGDAVLRAIGDVLRANIRKGDIIARYGGEEFLLLLPNTAPDGA
EEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEECCCCCCHH
LAVANHLLQAIRSLRVLWSGGVLEGITASIGVATFPDHVSRPDDLIVSADAALYRAKALG
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHCCCCCCEEEECHHHHHHHHHCC
RDQVVGSPAAPDAAGRPDLSPLHSAE
CCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GPLDRKLLNWRAGAVAAAIFAAGLAATWAAGALARHIIFSNTQSRFSADTAEMAAAVGE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHH
RVRAHAEVLVSMQGLYASVGRIDRAQFQRYVDVLDLVRRYPGFEALQVLRHVTPDGLDAF
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHH
VAEVRADTSVDPRGQPNFTVHPAGPRPVYNVIQFVEPMRGNERVLGFDVGSNPAQLDSLV
HHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHH
RGGDTGRIVATPPVKLIQDESGGLGFILRAPLYKAGELTATVEQRRAALLGFAAAVYRAN
HCCCCCCEEECCCCEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
DLMRGVLDARTLQQMNVRVLDRGYARVSAEGGVTAVPADPAAAAVLLFDSREPNLQVVTP
HHHHHHHHHHHHHHHCHHHEECCCEEEECCCCEEECCCCCCCEEEEEEECCCCCEEEECC
VAEVPIGIAAERSLVVGDRLWLLHFAARAGSSYEADQTIPAVVLASGSVISLLLAGMALS
HHHCCCCEECCCEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
LMRAGRLSRSLGTLDAEQRALVENPLAGILFTHGRAVLRGNHRMGELCGRPPEALAGLDL
HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHCCEEEEECCCCHHHHHCCCHHHHHCCCH
ADLAARPEDVAAFEAALAAIAAGGTAALELHLDCPDRPPVVVDAFGRPLFLQGRRGDGNV
HHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEECCCCCEEEECCCCCCCE
LWVMQDKTDALAVEAERRSHERALREANADLTRLVDAAEARTREITLLAELSSLLQSCQS
EEEEECCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TDEVFASVQAYASRLFPGEAGALYVLNRKRAQVVRGGRWGAPKADVASFTPDACWALRRG
HHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCC
QAFPVSEASRGLVCDHVAGAVGDAGVPDHVCQPLIARNRLLGLFYREPAAEGASASALQL
CCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHH
STMLAEQVSLALANIDLREQLRGQALRDPLTGLGNRRFVEDALALQIAGVTGDGRSLSVA
HHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHCCCCCHHHHHHHEEEEEEECCCCCEEEEE
LIDLDHFKQVNDTHSHEAGDAVLRAIGDVLRANIRKGDIIARYGGEEFLLLLPNTAPDGA
EEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEECCCCCCHH
LAVANHLLQAIRSLRVLWSGGVLEGITASIGVATFPDHVSRPDDLIVSADAALYRAKALG
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHCCCCCCEEEECHHHHHHHHHCC
RDQVVGSPAAPDAAGRPDLSPLHSAE
CCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]