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The map label for this gene is ydfH [H]

Identifier: 154243998

GI number: 154243998

Start: 43520

End: 44203

Strand: Reverse

Name: ydfH [H]

Synonym: Xaut_0040

Alternate gene names: 154243998

Gene position: 44203-43520 (Counterclockwise)

Preceding gene: 154243999

Following gene: 154243995

Centisome position: 0.83

GC content: 70.91

Gene sequence:

>684_bases
ATGCAGATCGAAGCAGAGCTGGGGGAGGCGACGGCGGAGACCGGCACCGCTCCGGGCCGCTCGCTGCGCGACACCGCCTA
TGAGGTGCTCAAGCAACGCATCATCATGTGCGTGTTCCGCCCCGGAGAGGCCCTGAGCGAGGCGCAGGTGGCGTCCAGCC
TCGGCCTCGGCCGCACCCCGGTGCGCCAGGCGTTCGACCGGCTCATGCGCGACGGCCTCGTGGAGGTGCTGCCGCGCAAG
GGCATCATCGTGCGTCCCATCAGCGCCGACGAAGTGCGCCACATGGTGGAGGTGCGGCTGCTGAACGAAGGCTTCTGCGC
CCGCCTTGCCGCCGAGCGCGCCGACAGTGCCACCCTCGCCGCTTTGGCCGACAATGTGCGGCGCGGCGGCGCGGCGGCGG
CGGAGCGTGATGTTGCAACGGCCATGGCGCTCGATCGCGCCTTCCACACCACCATTTCGGCGGCCGCCGGCAACCCGGTG
CTGGGCGACATCCTGAAGAATCTGCACGAGCGGGCGCAGCGGGTATGGTTCGTGTCGCTCCGCGATGCCGGCCATCATGC
CCGCGTGGTGGACGAGCACGCCGCCATCGTCTCCGCCCTCGCCGCCCGCGACGGCGACGGCGCCGAAGAGGCGACGCGGG
CGCACATCCTCTCCTTCGCAGCAAACATCACGCGGCAGCTCTGA

Upstream 100 bases:

>100_bases
AGGACCCGGTGCTGAAACACACCATCCGCCACGGCTATGATGTGAACATCCTGCCGATCGCCGGCTAAACTCGAAAAGAA
GACACGTCCGGAGGGCGCCC

Downstream 100 bases:

>100_bases
GCCCCCGCCTATCCCCGTGCCGGCGGGCGGCCCGGCGGCACGCTCTGGGCTTCGCGGGTGCGCACGAAGGTCCAGATGAC
GCGCGGCGTGCGCACCACCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MQIEAELGEATAETGTAPGRSLRDTAYEVLKQRIIMCVFRPGEALSEAQVASSLGLGRTPVRQAFDRLMRDGLVEVLPRK
GIIVRPISADEVRHMVEVRLLNEGFCARLAAERADSATLAALADNVRRGGAAAAERDVATAMALDRAFHTTISAAAGNPV
LGDILKNLHERAQRVWFVSLRDAGHHARVVDEHAAIVSALAARDGDGAEEATRAHILSFAANITRQL

Sequences:

>Translated_227_residues
MQIEAELGEATAETGTAPGRSLRDTAYEVLKQRIIMCVFRPGEALSEAQVASSLGLGRTPVRQAFDRLMRDGLVEVLPRK
GIIVRPISADEVRHMVEVRLLNEGFCARLAAERADSATLAALADNVRRGGAAAAERDVATAMALDRAFHTTISAAAGNPV
LGDILKNLHERAQRVWFVSLRDAGHHARVVDEHAAIVSALAARDGDGAEEATRAHILSFAANITRQL
>Mature_227_residues
MQIEAELGEATAETGTAPGRSLRDTAYEVLKQRIIMCVFRPGEALSEAQVASSLGLGRTPVRQAFDRLMRDGLVEVLPRK
GIIVRPISADEVRHMVEVRLLNEGFCARLAAERADSATLAALADNVRRGGAAAAERDVATAMALDRAFHTTISAAAGNPV
LGDILKNLHERAQRVWFVSLRDAGHHARVVDEHAAIVSALAARDGDGAEEATRAHILSFAANITRQL

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=213, Percent_Identity=29.1079812206573, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI87082149, Length=202, Percent_Identity=29.7029702970297, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI48994955, Length=224, Percent_Identity=28.125, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24375; Mature: 24375

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50949 HTH_GNTR ; PS00104 EPSP_SYNTHASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIEAELGEATAETGTAPGRSLRDTAYEVLKQRIIMCVFRPGEALSEAQVASSLGLGRTP
CCCCCHHCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCH
VRQAFDRLMRDGLVEVLPRKGIIVRPISADEVRHMVEVRLLNEGFCARLAAERADSATLA
HHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHH
ALADNVRRGGAAAAERDVATAMALDRAFHTTISAAAGNPVLGDILKNLHERAQRVWFVSL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEEE
RDAGHHARVVDEHAAIVSALAARDGDGAEEATRAHILSFAANITRQL
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQIEAELGEATAETGTAPGRSLRDTAYEVLKQRIIMCVFRPGEALSEAQVASSLGLGRTP
CCCCCHHCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCH
VRQAFDRLMRDGLVEVLPRKGIIVRPISADEVRHMVEVRLLNEGFCARLAAERADSATLA
HHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHH
ALADNVRRGGAAAAERDVATAMALDRAFHTTISAAAGNPVLGDILKNLHERAQRVWFVSL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEEE
RDAGHHARVVDEHAAIVSALAARDGDGAEEATRAHILSFAANITRQL
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]