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The map label for this gene is nusB [H]

Identifier: 153952373

GI number: 153952373

Start: 1394020

End: 1394418

Strand: Direct

Name: nusB [H]

Synonym: JJD26997_1576

Alternate gene names: 153952373

Gene position: 1394020-1394418 (Clockwise)

Preceding gene: 153951681

Following gene: 153951680

Centisome position: 75.55

GC content: 28.82

Gene sequence:

>399_bases
ATGGCAACGCGTCATCAAGTTCGCCAAAGCGTCATCTCCTTACTTTATGCTTTTGAATTAAATTCTCAAAACAATGTTTT
TGTAGATGAAATTTTAGATGAAAAAAAAATACGCAATGAACAAAAAAATTTTACTTTAAATTTATATCATGGAATTTTAG
ATAATTTAAACAATATTGATGAAACCTTAAATTCATTTCTAAACGATAATCAAATTACAGCTTTAGGACATGTAGAAAGA
GCTATACTAAGACTTGGAGCTTATGAGTTACTTTTTACTAATACTCCTAGTGCCATTGTCATCAATGAAGCTATAGAACT
TGCTAAAGAACTTGCTAATGACAATTCTCCAAAATTTATGAATGGAGTTTTAGATGCCTTGATAAAGGCTAAAAAATGA

Upstream 100 bases:

>100_bases
TAGAACAAGCCATAGAAAGAGCTGGAAGCAAGGCAGGCAATAAAGGCTTTGAAGCTATGACAACTGTAATCGAGATGTTA
AATTTAACAAAGGAGCTTTA

Downstream 100 bases:

>100_bases
AGCTTTGTGTCGCACTTGATCTTTCTACAAAAGAAGAATGCTTGCAACTTACTAAAGAATTAAAAAATTTAGACATATGG
TTAAAAGTAGGTTTAAGAGC

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNFTLNLYHGILDNLNNIDETLNSFLNDNQITALGHVER
AILRLGAYELLFTNTPSAIVINEAIELAKELANDNSPKFMNGVLDALIKAKK

Sequences:

>Translated_132_residues
MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNFTLNLYHGILDNLNNIDETLNSFLNDNQITALGHVER
AILRLGAYELLFTNTPSAIVINEAIELAKELANDNSPKFMNGVLDALIKAKK
>Mature_131_residues
ATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNFTLNLYHGILDNLNNIDETLNSFLNDNQITALGHVERA
ILRLGAYELLFTNTPSAIVINEAIELAKELANDNSPKFMNGVLDALIKAKK

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=120, Percent_Identity=35, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 14970; Mature: 14839

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNFTLNLYHGILDNLNNID
CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCEEHHHHHHHHHCHHHHH
ETLNSFLNDNQITALGHVERAILRLGAYELLFTNTPSAIVINEAIELAKELANDNSPKFM
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEECCCCEEHHHHHHHHHHHHCCCCCCHHH
NGVLDALIKAKK
HHHHHHHHHCCC
>Mature Secondary Structure 
ATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNFTLNLYHGILDNLNNID
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCEEHHHHHHHHHCHHHHH
ETLNSFLNDNQITALGHVERAILRLGAYELLFTNTPSAIVINEAIELAKELANDNSPKFM
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEECCCCEEHHHHHHHHHHHHCCCCCCHHH
NGVLDALIKAKK
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA