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The map label for this gene is yhdJ [C]

Identifier: 153951716

GI number: 153951716

Start: 1477665

End: 1480127

Strand: Direct

Name: yhdJ [C]

Synonym: JJD26997_1679

Alternate gene names: 153951716

Gene position: 1477665-1480127 (Clockwise)

Preceding gene: 153951160

Following gene: 153951717

Centisome position: 80.09

GC content: 25.86

Gene sequence:

>2463_bases
ATGGATTATAAAAAAGCATTTTATTCAAAGTTAGAGGATTGTTATTTGGGTGTGAAAATCAAAAATTCACAAAATCAAGC
AAAAAATGGTTTTACAAATTTACTTGCTATAAAAGAAAAATATTTTCAAAAAATCAAAGACTATTTAGATACACAAAAGC
TTTATACAGATACTTATAATAAGCTTTATAATTTTTTTAGCACTTATTTAAACGAAACAGGAACGCCGTTTTTTTACGAT
ACACCTATGTATAAAAATATCTATGCAAGGGTATATTCAAACTCAAAAGACACAAGTCTTTTTTATAAAACACAAAATTT
ATACTATGTAAAATCAGATACTATTTATAATCCTTTAAGCTTGCAAAGTGAAGATAAAAAATATACTTTAAATTTTCTTA
CCGATGAGTATGAGCAAAATGCTGATAATAATAAAAGTAAAATCAATTTTTATTTGCAAAATATACAAGATGATAATATA
AACATAAAAGTGATAAATTCTAAAAATCATGATGGCACAAATGTATTTAAACAAAACCCAAGTGAATTTAGCGATGTTTT
TTTAAAGACTTTAAAAAATGCACAAATAAACATAAAAGAAGAAGAGCTAAAAAAGCTTTTTAAAACTTATAAAAAACAAA
ATGAAGTAGATTTTTTCATCCATAAAAATGCGAAAGAATTTTTAAAAGAACAATTTGATTTGTGGTTGTTTTCTTATGTG
AATGATAGCATTACTGATTGGACTAAAGAAAAGATAGATGAGATTAACACTCTAAAACAGATCGCTTTTGCTATCATCGA
CTTGATAGCTGACTTTGAAAATGAGTTAAAAGCCATATGGCTAAAGCCAAAATTTGCTAAAAACACTCACTATGTCTTTA
GTATAGACACTATAAAAACTTATGCAAATAATGCTGATGAAATTTTAAAATCCATCTACAAAGATGTAAAATTTAATGAG
CAAATTACAGAATGGAAAGAATTAAATTTCATAAATGATGAATTTGATATAAAGTTTATAAACGATGAAAAATACAAATT
CTTACCGCTTGATACAAAGTATTTAAGTGAGGAAAATTATTTTAAACTTTTAGAAAGTTTTGAAAATTTAGATGAAATTT
TAAACGGAGAGCTTGTAAAAGCAGATAATTTTCAAGCGCTTAATTCTCTAATGCCAAAATATCAAGGTAAAATAGATCTA
ATCTACATAGATCCGCCATTTAACACAGGAAGCGACTTTGACTACAAAGATAAATTTCAAGATAGCACTTGGCTTTCTTT
AATGCACAATCGCTTGGAACTAGCAAAAGAATTTTTAAGCGATAAAGGAAGTTTTTATTTGCATTTAGATGAAAATGCTG
ATTATTTTGGGAGAATTTTACTGAACGAATTTTTTGGAGAAATGGAGTGTAAAAAAATTACATTTGATACAAATGCTACC
AAAGATGAAGAAGCTGATTTATTTGGATATAAAAGCTTTGGTAATAATTTTGTTTTAAAAAGCTCAACTATTCTTTTTTT
GAAAAAAACAAATAGCATTTTCAATAAACTGTGGAAGCCAAATAGAAATTCTTCTTTGTTAAATTTGGGGCAGCTTGATT
TAATAGGAATTTCTACAATTGAAACACCTAAGAAAATAACAGATTATGAATATTATGTTCAAATATGGAAAAATGGTAAA
TTATGTCATGAAAAGATTGATATTAAAGATGAAAAAATATATCCATTGGGTGATATTTGGAATGATTTGTATTCTTTTAC
TCAATCTGAAATGAGAGTTAGTGAAAATATATCTTTTTATAGCTCACAAAAACCGGAAAATATGTTAAGAAGAATAATAC
AGTCTAGTTCTGACGAAAATAGTGTTGTAATGGATTTTTTTGTAGGTAGTGGAACTACTTTGGTGGTATCTCATAAATTA
AATAGAAAGTATTTGGGTGTGGAAATGGGAGAACATTTTTATGAAAAATATTTGACATTTAATAAAGATACTAAACAATA
CGAATATAGACTAGGTTTGCTTGGAAGAATGAAGAATGTTATAGCTGGCGATATTGAATTTTGCGCTATAGATAAAAAAA
GAAGATCATCTCTTTCTAAAATGATAAATTTTAAAGGTGGTGGCGCTTTTAGATATTATGAACTTGAAAGCTATGAAGAA
AGTTTAGAAAATTGTGAGTATAAACTTGATGAAAACTCACTCATAGATTATAGAAAATCACGCAAATTCATAAAAGCACT
CAAAAAAGGCGAAAATATATGCCTTGATATGAATGCTTATGATAAAGAATTTGATATTTTTTTAACGATGTCTAATCTTT
TAGGACTTAAAATCAAAAATATTTTTATAGATGAAAATGGCATAAAATCTTGTAAATTTGAAAATAATGAGATTATAAAT
TTAGAAAATATAGACTTAATTAAATATCCAAAACTAAAAAATCTAATTTGGTGGGAAAAGTGA

Upstream 100 bases:

>100_bases
GCTCACATGAGTTTAGTGCCATGGGTTTTATAGAAGTTTTACCTTTGATTTTTAAGTCAAAAAAAGATATTATTTTAACT
TATAAATTTAAAGGCAAAGT

Downstream 100 bases:

>100_bases
TGAGTGGGACCGGTTTAATATTTACTGAATGTGAATTAATTATAAATCAGAATAGATATCCAAAACTTAGTGATTTTGAT
AATAAACAAAGATATATATA

Product: adenine-specific DNA methylase

Products: NA

Alternate protein names: M.HindVIP; HindVIP methyltransferase [H]

Number of amino acids: Translated: 820; Mature: 820

Protein sequence:

>820_residues
MDYKKAFYSKLEDCYLGVKIKNSQNQAKNGFTNLLAIKEKYFQKIKDYLDTQKLYTDTYNKLYNFFSTYLNETGTPFFYD
TPMYKNIYARVYSNSKDTSLFYKTQNLYYVKSDTIYNPLSLQSEDKKYTLNFLTDEYEQNADNNKSKINFYLQNIQDDNI
NIKVINSKNHDGTNVFKQNPSEFSDVFLKTLKNAQINIKEEELKKLFKTYKKQNEVDFFIHKNAKEFLKEQFDLWLFSYV
NDSITDWTKEKIDEINTLKQIAFAIIDLIADFENELKAIWLKPKFAKNTHYVFSIDTIKTYANNADEILKSIYKDVKFNE
QITEWKELNFINDEFDIKFINDEKYKFLPLDTKYLSEENYFKLLESFENLDEILNGELVKADNFQALNSLMPKYQGKIDL
IYIDPPFNTGSDFDYKDKFQDSTWLSLMHNRLELAKEFLSDKGSFYLHLDENADYFGRILLNEFFGEMECKKITFDTNAT
KDEEADLFGYKSFGNNFVLKSSTILFLKKTNSIFNKLWKPNRNSSLLNLGQLDLIGISTIETPKKITDYEYYVQIWKNGK
LCHEKIDIKDEKIYPLGDIWNDLYSFTQSEMRVSENISFYSSQKPENMLRRIIQSSSDENSVVMDFFVGSGTTLVVSHKL
NRKYLGVEMGEHFYEKYLTFNKDTKQYEYRLGLLGRMKNVIAGDIEFCAIDKKRRSSLSKMINFKGGGAFRYYELESYEE
SLENCEYKLDENSLIDYRKSRKFIKALKKGENICLDMNAYDKEFDIFLTMSNLLGLKIKNIFIDENGIKSCKFENNEIIN
LENIDLIKYPKLKNLIWWEK

Sequences:

>Translated_820_residues
MDYKKAFYSKLEDCYLGVKIKNSQNQAKNGFTNLLAIKEKYFQKIKDYLDTQKLYTDTYNKLYNFFSTYLNETGTPFFYD
TPMYKNIYARVYSNSKDTSLFYKTQNLYYVKSDTIYNPLSLQSEDKKYTLNFLTDEYEQNADNNKSKINFYLQNIQDDNI
NIKVINSKNHDGTNVFKQNPSEFSDVFLKTLKNAQINIKEEELKKLFKTYKKQNEVDFFIHKNAKEFLKEQFDLWLFSYV
NDSITDWTKEKIDEINTLKQIAFAIIDLIADFENELKAIWLKPKFAKNTHYVFSIDTIKTYANNADEILKSIYKDVKFNE
QITEWKELNFINDEFDIKFINDEKYKFLPLDTKYLSEENYFKLLESFENLDEILNGELVKADNFQALNSLMPKYQGKIDL
IYIDPPFNTGSDFDYKDKFQDSTWLSLMHNRLELAKEFLSDKGSFYLHLDENADYFGRILLNEFFGEMECKKITFDTNAT
KDEEADLFGYKSFGNNFVLKSSTILFLKKTNSIFNKLWKPNRNSSLLNLGQLDLIGISTIETPKKITDYEYYVQIWKNGK
LCHEKIDIKDEKIYPLGDIWNDLYSFTQSEMRVSENISFYSSQKPENMLRRIIQSSSDENSVVMDFFVGSGTTLVVSHKL
NRKYLGVEMGEHFYEKYLTFNKDTKQYEYRLGLLGRMKNVIAGDIEFCAIDKKRRSSLSKMINFKGGGAFRYYELESYEE
SLENCEYKLDENSLIDYRKSRKFIKALKKGENICLDMNAYDKEFDIFLTMSNLLGLKIKNIFIDENGIKSCKFENNEIIN
LENIDLIKYPKLKNLIWWEK
>Mature_820_residues
MDYKKAFYSKLEDCYLGVKIKNSQNQAKNGFTNLLAIKEKYFQKIKDYLDTQKLYTDTYNKLYNFFSTYLNETGTPFFYD
TPMYKNIYARVYSNSKDTSLFYKTQNLYYVKSDTIYNPLSLQSEDKKYTLNFLTDEYEQNADNNKSKINFYLQNIQDDNI
NIKVINSKNHDGTNVFKQNPSEFSDVFLKTLKNAQINIKEEELKKLFKTYKKQNEVDFFIHKNAKEFLKEQFDLWLFSYV
NDSITDWTKEKIDEINTLKQIAFAIIDLIADFENELKAIWLKPKFAKNTHYVFSIDTIKTYANNADEILKSIYKDVKFNE
QITEWKELNFINDEFDIKFINDEKYKFLPLDTKYLSEENYFKLLESFENLDEILNGELVKADNFQALNSLMPKYQGKIDL
IYIDPPFNTGSDFDYKDKFQDSTWLSLMHNRLELAKEFLSDKGSFYLHLDENADYFGRILLNEFFGEMECKKITFDTNAT
KDEEADLFGYKSFGNNFVLKSSTILFLKKTNSIFNKLWKPNRNSSLLNLGQLDLIGISTIETPKKITDYEYYVQIWKNGK
LCHEKIDIKDEKIYPLGDIWNDLYSFTQSEMRVSENISFYSSQKPENMLRRIIQSSSDENSVVMDFFVGSGTTLVVSHKL
NRKYLGVEMGEHFYEKYLTFNKDTKQYEYRLGLLGRMKNVIAGDIEFCAIDKKRRSSLSKMINFKGGGAFRYYELESYEE
SLENCEYKLDENSLIDYRKSRKFIKALKKGENICLDMNAYDKEFDIFLTMSNLLGLKIKNIFIDENGIKSCKFENNEIIN
LENIDLIKYPKLKNLIWWEK

Specific function: Unknown

COG id: COG2189

COG function: function code L; Adenine specific DNA methylase Mod

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002941
- InterPro:   IPR002052
- InterPro:   IPR001091 [H]

Pfam domain/function: PF01555 N6_N4_Mtase [H]

EC number: =2.1.1.72 [H]

Molecular weight: Translated: 97157; Mature: 97157

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYKKAFYSKLEDCYLGVKIKNSQNQAKNGFTNLLAIKEKYFQKIKDYLDTQKLYTDTYN
CCHHHHHHHHHHHHEEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLYNFFSTYLNETGTPFFYDTPMYKNIYARVYSNSKDTSLFYKTQNLYYVKSDTIYNPLS
HHHHHHHHHHCCCCCCEEECCCHHHHHHHHHCCCCCCCEEEEEECCEEEEECCCEECCCC
LQSEDKKYTLNFLTDEYEQNADNNKSKINFYLQNIQDDNINIKVINSKNHDGTNVFKQNP
CCCCCCEEEEEEHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCC
SEFSDVFLKTLKNAQINIKEEELKKLFKTYKKQNEVDFFIHKNAKEFLKEQFDLWLFSYV
HHHHHHHHHHHCCCCEEECHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHH
NDSITDWTKEKIDEINTLKQIAFAIIDLIADFENELKAIWLKPKFAKNTHYVFSIDTIKT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEHHHHH
YANNADEILKSIYKDVKFNEQITEWKELNFINDEFDIKFINDEKYKFLPLDTKYLSEENY
HCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCHHHCCCCHH
FKLLESFENLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPFNTGSDFDYKDKFQ
HHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHCC
DSTWLSLMHNRLELAKEFLSDKGSFYLHLDENADYFGRILLNEFFGEMECKKITFDTNAT
CHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCC
KDEEADLFGYKSFGNNFVLKSSTILFLKKTNSIFNKLWKPNRNSSLLNLGQLDLIGISTI
CCCCCCEEEECCCCCCEEEECCEEEEEECCHHHHHHHCCCCCCCCEEECCCEEEEEEECC
ETPKKITDYEYYVQIWKNGKLCHEKIDIKDEKIYPLGDIWNDLYSFTQSEMRVSENISFY
CCCCHHCCCEEEEEEECCCCEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
SSQKPENMLRRIIQSSSDENSVVMDFFVGSGTTLVVSHKLNRKYLGVEMGEHFYEKYLTF
CCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCEEECHHHHHHHHHHHHHC
NKDTKQYEYRLGLLGRMKNVIAGDIEFCAIDKKRRSSLSKMINFKGGGAFRYYELESYEE
CCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCCEEEEEEHHHHHH
SLENCEYKLDENSLIDYRKSRKFIKALKKGENICLDMNAYDKEFDIFLTMSNLLGLKIKN
HHHCCCEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEECHHCCEEEEE
IFIDENGIKSCKFENNEIINLENIDLIKYPKLKNLIWWEK
EEEECCCCCCCCCCCCCEEEECCCCEEECCCCCCCCCCCC
>Mature Secondary Structure
MDYKKAFYSKLEDCYLGVKIKNSQNQAKNGFTNLLAIKEKYFQKIKDYLDTQKLYTDTYN
CCHHHHHHHHHHHHEEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLYNFFSTYLNETGTPFFYDTPMYKNIYARVYSNSKDTSLFYKTQNLYYVKSDTIYNPLS
HHHHHHHHHHCCCCCCEEECCCHHHHHHHHHCCCCCCCEEEEEECCEEEEECCCEECCCC
LQSEDKKYTLNFLTDEYEQNADNNKSKINFYLQNIQDDNINIKVINSKNHDGTNVFKQNP
CCCCCCEEEEEEHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCC
SEFSDVFLKTLKNAQINIKEEELKKLFKTYKKQNEVDFFIHKNAKEFLKEQFDLWLFSYV
HHHHHHHHHHHCCCCEEECHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHH
NDSITDWTKEKIDEINTLKQIAFAIIDLIADFENELKAIWLKPKFAKNTHYVFSIDTIKT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEHHHHH
YANNADEILKSIYKDVKFNEQITEWKELNFINDEFDIKFINDEKYKFLPLDTKYLSEENY
HCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCHHHCCCCHH
FKLLESFENLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPFNTGSDFDYKDKFQ
HHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHCC
DSTWLSLMHNRLELAKEFLSDKGSFYLHLDENADYFGRILLNEFFGEMECKKITFDTNAT
CHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCC
KDEEADLFGYKSFGNNFVLKSSTILFLKKTNSIFNKLWKPNRNSSLLNLGQLDLIGISTI
CCCCCCEEEECCCCCCEEEECCEEEEEECCHHHHHHHCCCCCCCCEEECCCEEEEEEECC
ETPKKITDYEYYVQIWKNGKLCHEKIDIKDEKIYPLGDIWNDLYSFTQSEMRVSENISFY
CCCCHHCCCEEEEEEECCCCEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
SSQKPENMLRRIIQSSSDENSVVMDFFVGSGTTLVVSHKLNRKYLGVEMGEHFYEKYLTF
CCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCEEECHHHHHHHHHHHHHC
NKDTKQYEYRLGLLGRMKNVIAGDIEFCAIDKKRRSSLSKMINFKGGGAFRYYELESYEE
CCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCCEEEEEEHHHHHH
SLENCEYKLDENSLIDYRKSRKFIKALKKGENICLDMNAYDKEFDIFLTMSNLLGLKIKN
HHHCCCEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEECHHCCEEEEE
IFIDENGIKSCKFENNEIINLENIDLIKYPKLKNLIWWEK
EEEECCCCCCCCCCCCCEEEECCCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]