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The map label for this gene is sodB [H]

Identifier: 153951398

GI number: 153951398

Start: 171988

End: 172650

Strand: Direct

Name: sodB [H]

Synonym: JJD26997_0184

Alternate gene names: 153951398

Gene position: 171988-172650 (Clockwise)

Preceding gene: 153951773

Following gene: 153952501

Centisome position: 9.32

GC content: 33.94

Gene sequence:

>663_bases
ATGTTTGAATTAAGAAAATTACCTTATGATACCGATGCTTTTGGTGATTTTTTGAGTGCTGAAACTTTTAGCTACCATCA
TGGAAAACATCACAATACTTATGTTGCAAATCTAAATAATCTTATTAAAGATACTGAATTTTCAGGCAAAGATCTTGTAA
GCATTATCAAAACTTCAAATGGGGGCGTATTTAATAACGCAGCTCAAGTTTATAATCATGATTTTTATTTTGATTGCATT
AAGCCAAGTACAGGCTGTGGCTGTGGCGGTTCATGTCAAAGTATGGACGCTAATTTACAAGCGGCACTAGAAAAAGAATT
TGGATCTTTAGAAAATTTCAAAGCTCAATTTATCAAAGGTGCGATAGGAGTTTTTGGTTCAGGATGGTTTTGGTTAGTTT
ATAATACTAAAAATCAAAAACTAGAATTTGTAGGTACTTCAAACGCAGCTACACCAATTACCGAAGATAAAGTTCCTTTA
CTTGTTGTAGATGTTTGGGAGCATGCTTATTATGTAGATCATCGCAATGCACGCCCTGTTTATTTAGAGAAATTCTATGC
TCATATCAATTGGGAATTTGTTGCAAAAGCTTATGAATGGGCTTTAAAAGAAGGCATGGGATCAGTTAGCTTTTACGCAG
ATGAACTTCACCCTGTAAAATAA

Upstream 100 bases:

>100_bases
AAATAGAAATTTTAGCTACTAAGCTTTTAAGATATTTTTACTCTTTTTAATATTATTATGGTAATATTTTCAATATCAAA
CTAAAAATAAAGGAGAAATT

Downstream 100 bases:

>100_bases
TTTTAATCCTTTTTGTGCTAGAATGGATTTTGACTTAATGTCAAAATCCTACGCAAAAAGGGGCAAAAATGGATAATTCT
TTATCTGCATACACTCAAAA

Product: superoxide dismutase, Fe

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MFELRKLPYDTDAFGDFLSAETFSYHHGKHHNTYVANLNNLIKDTEFSGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCI
KPSTGCGCGGSCQSMDANLQAALEKEFGSLENFKAQFIKGAIGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
LVVDVWEHAYYVDHRNARPVYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYADELHPVK

Sequences:

>Translated_220_residues
MFELRKLPYDTDAFGDFLSAETFSYHHGKHHNTYVANLNNLIKDTEFSGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCI
KPSTGCGCGGSCQSMDANLQAALEKEFGSLENFKAQFIKGAIGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
LVVDVWEHAYYVDHRNARPVYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYADELHPVK
>Mature_220_residues
MFELRKLPYDTDAFGDFLSAETFSYHHGKHHNTYVANLNNLIKDTEFSGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCI
KPSTGCGCGGSCQSMDANLQAALEKEFGSLENFKAQFIKGAIGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
LVVDVWEHAYYVDHRNARPVYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYADELHPVK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=199, Percent_Identity=34.1708542713568, Blast_Score=117, Evalue=6e-27,
Organism=Homo sapiens, GI67782305, Length=199, Percent_Identity=34.1708542713568, Blast_Score=117, Evalue=6e-27,
Organism=Homo sapiens, GI67782309, Length=197, Percent_Identity=30.9644670050761, Blast_Score=97, Evalue=1e-20,
Organism=Escherichia coli, GI1787946, Length=195, Percent_Identity=58.974358974359, Blast_Score=230, Evalue=5e-62,
Organism=Escherichia coli, GI1790342, Length=211, Percent_Identity=34.5971563981043, Blast_Score=125, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17506561, Length=199, Percent_Identity=33.1658291457286, Blast_Score=103, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17569479, Length=197, Percent_Identity=32.48730964467, Blast_Score=100, Evalue=5e-22,
Organism=Saccharomyces cerevisiae, GI6321796, Length=212, Percent_Identity=27.3584905660377, Blast_Score=82, Evalue=5e-17,
Organism=Drosophila melanogaster, GI17136812, Length=206, Percent_Identity=34.4660194174757, Blast_Score=119, Evalue=2e-27,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 24858; Mature: 24858

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFELRKLPYDTDAFGDFLSAETFSYHHGKHHNTYVANLNNLIKDTEFSGKDLVSIIKTSN
CCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCEEEEHHHHHHHCCCCCCHHHEEEEECCC
GGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSMDANLQAALEKEFGSLENFKAQFIKG
CCEECCHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHH
AIGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPLLVVDVWEHAYYVDHRNARPV
HHHHCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCH
YLEKFYAHINWEFVAKAYEWALKEGMGSVSFYADELHPVK
HHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
>Mature Secondary Structure
MFELRKLPYDTDAFGDFLSAETFSYHHGKHHNTYVANLNNLIKDTEFSGKDLVSIIKTSN
CCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCEEEEHHHHHHHCCCCCCHHHEEEEECCC
GGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSMDANLQAALEKEFGSLENFKAQFIKG
CCEECCHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHH
AIGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPLLVVDVWEHAYYVDHRNARPV
HHHHCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCH
YLEKFYAHINWEFVAKAYEWALKEGMGSVSFYADELHPVK
HHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8025686 [H]