Click here to switch to the map view.

The map label for this gene is rpsT [H]

Identifier: 153951103

GI number: 153951103

Start: 1735140

End: 1735403

Strand: Direct

Name: rpsT [H]

Synonym: JJD26997_1965

Alternate gene names: 153951103

Gene position: 1735140-1735403 (Clockwise)

Preceding gene: 153952462

Following gene: 153952433

Centisome position: 94.04

GC content: 32.2

Gene sequence:

>264_bases
ATGGCAAACCATAAATCTGCTGAAAAAAGAGCAAGACAAACTATTAAAAAAACAGAAAGAAATAGATTCTATAGAACAAG
ACTTAAAAATATAACTAAAGCTGTAAGAGAAGCTGCAGCAAATGGAGATAAAAATGCTGCTAATGAAGCTTTAAAAGTAG
CTAATAAAAGCATTCATGCTATGGTAAGTCACGGTTTTATTAAAAAACAAACTGCTTCTCGCCGTGTAAGCCGCTTAGCC
CTTTTAGTAAATAAAATCGCATAA

Upstream 100 bases:

>100_bases
AAATTTAAAAGATTTATTTTGAAATTTTGCTTAAATTAATTAAATTTTAAATTTTGTTCCTATATAATTTAGTCTTTAAT
TTCAAAAAAGGAAAATATAA

Downstream 100 bases:

>100_bases
TTTTCTATATAGTTTTTAATGTTAGCTAGCAAACTAGATCCTTTTTTAAAACGCTTTGAAGAGTTAAATTCTCTTCTTAG
CAGTTCTGATATACTCAATG

Product: 30S ribosomal protein S20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 86

Protein sequence:

>87_residues
MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDKNAANEALKVANKSIHAMVSHGFIKKQTASRRVSRLA
LLVNKIA

Sequences:

>Translated_87_residues
MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDKNAANEALKVANKSIHAMVSHGFIKKQTASRRVSRLA
LLVNKIA
>Mature_86_residues
ANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDKNAANEALKVANKSIHAMVSHGFIKKQTASRRVSRLAL
LVNKIA

Specific function: Binds directly to 16S ribosomal RNA [H]

COG id: COG0268

COG function: function code J; Ribosomal protein S20

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S20P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002583
- ProDom:   PD004231 [H]

Pfam domain/function: PF01649 Ribosomal_S20p [H]

EC number: NA

Molecular weight: Translated: 9799; Mature: 9667

Theoretical pI: Translated: 12.22; Mature: 12.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDKNAANEALKVANKSIHA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
MVSHGFIKKQTASRRVSRLALLVNKIA
HHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
ANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDKNAANEALKVANKSIHA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
MVSHGFIKKQTASRRVSRLALLVNKIA
HHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA