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The map label for this gene is intB [H]

Identifier: 153950873

GI number: 153950873

Start: 976127

End: 977386

Strand: Reverse

Name: intB [H]

Synonym: YpsIP31758_0809

Alternate gene names: 153950873

Gene position: 977386-976127 (Counterclockwise)

Preceding gene: 153949515

Following gene: 153950152

Centisome position: 20.69

GC content: 50.87

Gene sequence:

>1260_bases
ATGGCACTCACCGATGTGAAAGTGCGGTCAGCAAAAACCGAAGATAAACCTTACAAACTGACTGACAGCGATGGCATGCA
TTTGCTGGTTCATCCCAATGGGTCAAAATATTGGCGGCTACGTTATCGCTACCTCGGCAAAGAAAATACCCTGGCATTGG
GCGTCTACCCTGCCCTATCACTTTCAGAAGCGCGGGCTAAACGCGACGCCGCGCGCAAATTGATTGCCGAGGGCTCCGAC
CCCAGTGAGGTCAAGCGGGCGAAAAAGGCTTTACCCGATGCCACTCAAACATTCGAAGTTATTGCCCGGCGCTGGCATGC
TGCTAATAAGCAATGGTCTGAGCAACACAGCGCAAAGGTGCTCAAAAATCTGGAAATGTATCTATTTCCTGTGAACGGTA
CTCGCGATATCGCTTCACTCAGGACACCCGACCTGCTCATCCCTATTCGGGTAGCCGAAAATGCAGGTTTTCTTGAAGTG
TCTGCCCGTCTACTGCAACGCACCACCGCCATCATGCGTTATGCCGTCCAGTGTGGGATCATCGATTACAACCCAGCTCA
GGACATGGTTGGCGCTCTTACCACGGTTAAACGCGTTCACCGGCCTGCCCTCGAACTCAATCGCATCCCTGAGTTACTAT
CACGTATTGAGGGTTATAAGGGCCAACCTCTTACTCGCCTGGCCGTGATGCTTAATCTATTCGTTTTTATTCGTTCCAGT
GAACTTCGTTATGCACGCTGGAGTGAAATCGATACAGAAAGAGCACTTTGGACCATCCCGGCTGAAAGAGAACCTATCCC
CGGAGTTAAATTCTCACACCGAGGTTCAAAGATGCGCACCACGCATCTGGTCCCACTCAGCCAGCAATCGTTAGCTATGC
TGGAAGAGCTTCGCCTTTCTGGTGGTGAGAGTGGTCTGATATTTCCCGGTGACCATGATCCTCGTAAGCCCATCAGTGAA
AACACCATCAACAAGGCATTACGTTTGATGGGGTATGAGACCAAGACGGAAGTGTGTGGCCATGGTTTCCGAGCGATGGC
GTGCAGCGCATTGATTGAGTCTGGTTTATGGTCACGGGATGCGGTGGAGCGGCAAATGAGCCATCAGGAACGTAATGGTG
TTCGGGCAGCGTACATTCACAAAGCCGAGTTTCTGGATGAGCGCAGACTGATGTTGCAATGGTGGGCAGATTTTCTGGAT
ACGAACAGAGAGATTGCAGTGAGTCCATTTGATTTTGCAAAACAGTATGTCCCACAGTAA

Upstream 100 bases:

>100_bases
CCTGAATCTACCTACATCAAGTTACACCTGTGGGCACAAATGCGGGTACAGTCCAGTTCGATAATTATTATACCCACAAA
ATCTATTCCGGAGGCCATCC

Downstream 100 bases:

>100_bases
TAGCGCATGCCTTGCTCCCTGCTTGCTCAAGTATCTTATGACATAAAAGCCAACCGTCCCCTATTTATTGCATAATATCT
GAATAGTAACAGATAAGGAT

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MALTDVKVRSAKTEDKPYKLTDSDGMHLLVHPNGSKYWRLRYRYLGKENTLALGVYPALSLSEARAKRDAARKLIAEGSD
PSEVKRAKKALPDATQTFEVIARRWHAANKQWSEQHSAKVLKNLEMYLFPVNGTRDIASLRTPDLLIPIRVAENAGFLEV
SARLLQRTTAIMRYAVQCGIIDYNPAQDMVGALTTVKRVHRPALELNRIPELLSRIEGYKGQPLTRLAVMLNLFVFIRSS
ELRYARWSEIDTERALWTIPAEREPIPGVKFSHRGSKMRTTHLVPLSQQSLAMLEELRLSGGESGLIFPGDHDPRKPISE
NTINKALRLMGYETKTEVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEFLDERRLMLQWWADFLD
TNREIAVSPFDFAKQYVPQ

Sequences:

>Translated_419_residues
MALTDVKVRSAKTEDKPYKLTDSDGMHLLVHPNGSKYWRLRYRYLGKENTLALGVYPALSLSEARAKRDAARKLIAEGSD
PSEVKRAKKALPDATQTFEVIARRWHAANKQWSEQHSAKVLKNLEMYLFPVNGTRDIASLRTPDLLIPIRVAENAGFLEV
SARLLQRTTAIMRYAVQCGIIDYNPAQDMVGALTTVKRVHRPALELNRIPELLSRIEGYKGQPLTRLAVMLNLFVFIRSS
ELRYARWSEIDTERALWTIPAEREPIPGVKFSHRGSKMRTTHLVPLSQQSLAMLEELRLSGGESGLIFPGDHDPRKPISE
NTINKALRLMGYETKTEVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEFLDERRLMLQWWADFLD
TNREIAVSPFDFAKQYVPQ
>Mature_418_residues
ALTDVKVRSAKTEDKPYKLTDSDGMHLLVHPNGSKYWRLRYRYLGKENTLALGVYPALSLSEARAKRDAARKLIAEGSDP
SEVKRAKKALPDATQTFEVIARRWHAANKQWSEQHSAKVLKNLEMYLFPVNGTRDIASLRTPDLLIPIRVAENAGFLEVS
ARLLQRTTAIMRYAVQCGIIDYNPAQDMVGALTTVKRVHRPALELNRIPELLSRIEGYKGQPLTRLAVMLNLFVFIRSSE
LRYARWSEIDTERALWTIPAEREPIPGVKFSHRGSKMRTTHLVPLSQQSLAMLEELRLSGGESGLIFPGDHDPRKPISEN
TINKALRLMGYETKTEVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEFLDERRLMLQWWADFLDT
NREIAVSPFDFAKQYVPQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788690, Length=404, Percent_Identity=33.4158415841584, Blast_Score=223, Evalue=1e-59,
Organism=Escherichia coli, GI1788974, Length=403, Percent_Identity=34.2431761786601, Blast_Score=222, Evalue=3e-59,
Organism=Escherichia coli, GI145693166, Length=404, Percent_Identity=36.1386138613861, Blast_Score=220, Evalue=1e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47710; Mature: 47578

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALTDVKVRSAKTEDKPYKLTDSDGMHLLVHPNGSKYWRLRYRYLGKENTLALGVYPALS
CCCCCCCHHCCCCCCCCEEEECCCCCEEEECCCCCCEEEEEEEECCCCCCEEEECCCCCC
LSEARAKRDAARKLIAEGSDPSEVKRAKKALPDATQTFEVIARRWHAANKQWSEQHSAKV
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
LKNLEMYLFPVNGTRDIASLRTPDLLIPIRVAENAGFLEVSARLLQRTTAIMRYAVQCGI
HHCCEEEEEECCCCCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC
IDYNPAQDMVGALTTVKRVHRPALELNRIPELLSRIEGYKGQPLTRLAVMLNLFVFIRSS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
ELRYARWSEIDTERALWTIPAEREPIPGVKFSHRGSKMRTTHLVPLSQQSLAMLEELRLS
CCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHC
GGESGLIFPGDHDPRKPISENTINKALRLMGYETKTEVCGHGFRAMACSALIESGLWSRD
CCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHCCCCCHH
AVERQMSHQERNGVRAAYIHKAEFLDERRLMLQWWADFLDTNREIAVSPFDFAKQYVPQ
HHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCC
>Mature Secondary Structure 
ALTDVKVRSAKTEDKPYKLTDSDGMHLLVHPNGSKYWRLRYRYLGKENTLALGVYPALS
CCCCCCHHCCCCCCCCEEEECCCCCEEEECCCCCCEEEEEEEECCCCCCEEEECCCCCC
LSEARAKRDAARKLIAEGSDPSEVKRAKKALPDATQTFEVIARRWHAANKQWSEQHSAKV
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
LKNLEMYLFPVNGTRDIASLRTPDLLIPIRVAENAGFLEVSARLLQRTTAIMRYAVQCGI
HHCCEEEEEECCCCCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC
IDYNPAQDMVGALTTVKRVHRPALELNRIPELLSRIEGYKGQPLTRLAVMLNLFVFIRSS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
ELRYARWSEIDTERALWTIPAEREPIPGVKFSHRGSKMRTTHLVPLSQQSLAMLEELRLS
CCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHC
GGESGLIFPGDHDPRKPISENTINKALRLMGYETKTEVCGHGFRAMACSALIESGLWSRD
CCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHCCCCCHH
AVERQMSHQERNGVRAAYIHKAEFLDERRLMLQWWADFLDTNREIAVSPFDFAKQYVPQ
HHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]