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The map label for this gene is rodZ [H]

Identifier: 153950778

GI number: 153950778

Start: 1395783

End: 1396874

Strand: Direct

Name: rodZ [H]

Synonym: YpsIP31758_1185

Alternate gene names: 153950778

Gene position: 1395783-1396874 (Clockwise)

Preceding gene: 153948563

Following gene: 153950353

Centisome position: 29.55

GC content: 49.82

Gene sequence:

>1092_bases
ATGAATACTGAAGCCTCCCAAGATCAAACTGTTACAGAGACGCCAGGTGTGCGCCTGCGTCAAGCCCGCGAATCATTAGG
GCTAACCCAGCAGACTGTTGCAGAACGTCTGTGTCTGAAAGTATCCACAATCCGTGATATTGAGGAGGATAACGCGCAAG
CTAATCTCGCCTCGACATTCCACCGTGGCTACATTCGTTCTTACGCCAAGCTGGTTCATCTTCCTGAAGATGAGTTATTG
CCTATTTTGGAGAAACAAGCGCCAGTCAGAGCGGCGAAAGTTGCCCCAATGCAAAGTTTTTCATTGGGTAAAAAACACAA
AAAACGTGATGGCTGGTTGATGAGTTTCACCTGGCTTATTGTGTTGGTTGTGTTAGGTCTGACCGGAGCATGGTGGTGGC
AAAATCATCAGGCACAGCAAGCAGAGATTGCCAATATGGTTGATCAATCTTCTGCCCAACTGTCACAAAATGGCGGGCAA
CCAGTGCCGCTAACTGATGATAACCGCGATGCTATTGCGCCAACGGATGCCCCGGCACCGGTAGCCAATGGTCAGCCAGT
GCCACTGACAAATCATTCAGTCTCGGCAATAACTAATTCAGCTCCAACAACCAGTTCAGTTCCAACAACTAGTTCAGCGA
CAACAAGTTCAGTTCCGACAACAAGCTCAGTTCCAAAAATAAATAGTACCGAACCTGTCGATACGGCGAATACAAATACC
ACAATGCATCAGGAGGGGGCTGCGTCAGCGGCCGTTTCCCCAAGTCAGGTCCCGCAACCTGGTATGCCCACAGGCCAACC
GCCATTACCTACAGCAGACGCTGGGGTAAGTGGTAGCGCGTCATCTGTGGGGGCGTTGGTGATGAATTTTACAGCAGATT
GTTGGTTGCAGGTTGTTGATGCAACGGGCAAGACGTTGTTTAGTGGTATTCAAAAAGGGGGCGCTGTGCTTAACCTGGCA
GGTAAAGCGCCCTATAAGCTGACTATCGGTGCACCAGGTGCTCTGACGATTTCGTATCAGGGTAACCCGGTAGATTTAAG
TAAGTTTATTAAGGCTAATCGCGTAGCCCGCCTGACTGTCGGTGTAGAGTAG

Upstream 100 bases:

>100_bases
TTCGCCGCGCTGGCAGGCCGTCAAGATAGTGTACAACGCTATGGCAAGCAGCTTGCGCGAAGTTTTCCACAATCCAAACA
GTACCAGCATTTTCTAGCTA

Downstream 100 bases:

>100_bases
AATGATGGTTTTGACAAGCACCCTTGTAGTTTTGGTAAATACTATGATGGTTTTGACAAATATCATGTTGTAAGAACTAC
ACGACCGTAAAGGAGAGTAT

Product: cytoskeletal protein RodZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MNTEASQDQTVTETPGVRLRQARESLGLTQQTVAERLCLKVSTIRDIEEDNAQANLASTFHRGYIRSYAKLVHLPEDELL
PILEKQAPVRAAKVAPMQSFSLGKKHKKRDGWLMSFTWLIVLVVLGLTGAWWWQNHQAQQAEIANMVDQSSAQLSQNGGQ
PVPLTDDNRDAIAPTDAPAPVANGQPVPLTNHSVSAITNSAPTTSSVPTTSSATTSSVPTTSSVPKINSTEPVDTANTNT
TMHQEGAASAAVSPSQVPQPGMPTGQPPLPTADAGVSGSASSVGALVMNFTADCWLQVVDATGKTLFSGIQKGGAVLNLA
GKAPYKLTIGAPGALTISYQGNPVDLSKFIKANRVARLTVGVE

Sequences:

>Translated_363_residues
MNTEASQDQTVTETPGVRLRQARESLGLTQQTVAERLCLKVSTIRDIEEDNAQANLASTFHRGYIRSYAKLVHLPEDELL
PILEKQAPVRAAKVAPMQSFSLGKKHKKRDGWLMSFTWLIVLVVLGLTGAWWWQNHQAQQAEIANMVDQSSAQLSQNGGQ
PVPLTDDNRDAIAPTDAPAPVANGQPVPLTNHSVSAITNSAPTTSSVPTTSSATTSSVPTTSSVPKINSTEPVDTANTNT
TMHQEGAASAAVSPSQVPQPGMPTGQPPLPTADAGVSGSASSVGALVMNFTADCWLQVVDATGKTLFSGIQKGGAVLNLA
GKAPYKLTIGAPGALTISYQGNPVDLSKFIKANRVARLTVGVE
>Mature_363_residues
MNTEASQDQTVTETPGVRLRQARESLGLTQQTVAERLCLKVSTIRDIEEDNAQANLASTFHRGYIRSYAKLVHLPEDELL
PILEKQAPVRAAKVAPMQSFSLGKKHKKRDGWLMSFTWLIVLVVLGLTGAWWWQNHQAQQAEIANMVDQSSAQLSQNGGQ
PVPLTDDNRDAIAPTDAPAPVANGQPVPLTNHSVSAITNSAPTTSSVPTTSSATTSSVPTTSSVPKINSTEPVDTANTNT
TMHQEGAASAAVSPSQVPQPGMPTGQPPLPTADAGVSGSASSVGALVMNFTADCWLQVVDATGKTLFSGIQKGGAVLNLA
GKAPYKLTIGAPGALTISYQGNPVDLSKFIKANRVARLTVGVE

Specific function: Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis [H]

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein. Note=Forms helical filaments along the long axis of the cell (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788864, Length=363, Percent_Identity=54.2699724517906, Blast_Score=377, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 38220; Mature: 38220

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTEASQDQTVTETPGVRLRQARESLGLTQQTVAERLCLKVSTIRDIEEDNAQANLASTF
CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
HRGYIRSYAKLVHLPEDELLPILEKQAPVRAAKVAPMQSFSLGKKHKKRDGWLMSFTWLI
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCHHHHCCHHHHHCCCCHHHHHHHH
VLVVLGLTGAWWWQNHQAQQAEIANMVDQSSAQLSQNGGQPVPLTDDNRDAIAPTDAPAP
HHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
VANGQPVPLTNHSVSAITNSAPTTSSVPTTSSATTSSVPTTSSVPKINSTEPVDTANTNT
CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TMHQEGAASAAVSPSQVPQPGMPTGQPPLPTADAGVSGSASSVGALVMNFTADCWLQVVD
EECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ATGKTLFSGIQKGGAVLNLAGKAPYKLTIGAPGALTISYQGNPVDLSKFIKANRVARLTV
HHHHHHHHHHHCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHCCEEEEEE
GVE
ECC
>Mature Secondary Structure
MNTEASQDQTVTETPGVRLRQARESLGLTQQTVAERLCLKVSTIRDIEEDNAQANLASTF
CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
HRGYIRSYAKLVHLPEDELLPILEKQAPVRAAKVAPMQSFSLGKKHKKRDGWLMSFTWLI
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCHHHHCCHHHHHCCCCHHHHHHHH
VLVVLGLTGAWWWQNHQAQQAEIANMVDQSSAQLSQNGGQPVPLTDDNRDAIAPTDAPAP
HHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
VANGQPVPLTNHSVSAITNSAPTTSSVPTTSSATTSSVPTTSSVPKINSTEPVDTANTNT
CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TMHQEGAASAAVSPSQVPQPGMPTGQPPLPTADAGVSGSASSVGALVMNFTADCWLQVVD
EECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ATGKTLFSGIQKGGAVLNLAGKAPYKLTIGAPGALTISYQGNPVDLSKFIKANRVARLTV
HHHHHHHHHHHCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHCCEEEEEE
GVE
ECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA