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The map label for this gene is pilF

Identifier: 153948563

GI number: 153948563

Start: 1395044

End: 1395793

Strand: Direct

Name: pilF

Synonym: YpsIP31758_1184

Alternate gene names: NA

Gene position: 1395044-1395793 (Clockwise)

Preceding gene: 153948736

Following gene: 153950778

Centisome position: 29.54

GC content: 48.93

Gene sequence:

>750_bases
ATGAAGCTGACAAAACTGTGGAGAGTTTGCCTGGTCGTAAGTGTATTGACAGGGTGCTCCGGTACCCCACCGGAGAACAC
GAGTCAGGCAGTTGCTGGGCAGACACGCTTACAACTGGGTTTAGCGTATTTGGCACAAGGCGATCTTACTGCCGCGCGGA
AGAACCTTGAAAAAGCGGTAGAGGCGGATCCACAGGATTATCGCACTCAATTAGGGATGGCATTTTATGCGCAACGTATT
GGTGAAAACAGTGCCGCAGAGCAGCGTTATCAACAAGCAATGAAACTGGCTCCGGGAAATGGCACTGTACTGAATAATTA
CGGTGCGTTTCTGTGTAGTTTAGGGCAGTATGTATCGGCGCAACAACAGTTTAGTGCTGCGGCATTGCTACCTGATTACG
GTCAGGTTGCTGATAGTCTGGAAAACGCAGGTTATTGCTTTTTACGGGCTAATCAGGATAAACAAGCTCGGGTCTTGTTG
AGCCGGGCGTTGAAGTATGATCCGGATAAAGGCGAGCCTTTGCTTGCGGAAGCCCAAAGGTATTTTGGGGAAGGTAATCG
CGCACAAGCGCAACTATTACTGGATGTTTACCAACATACGCTTCCAGCCAGTGCTGAGAGTTTATGGTTACAAATTCGTT
TCGCCGCGCTGGCAGGCCGTCAAGATAGTGTACAACGCTATGGCAAGCAGCTTGCGCGAAGTTTTCCACAATCCAAACAG
TACCAGCATTTTCTAGCTAATGAATACTGA

Upstream 100 bases:

>100_bases
GAAGTCTCATCGCGTAAAGGTGGCTAAAAACCCGTGATGAGAATACCATGAGCGCCAGAATTTGGTACTTATCTGCATAT
ATAAGGACAATTGAGAAAGC

Downstream 100 bases:

>100_bases
AGCCTCCCAAGATCAAACTGTTACAGAGACGCCAGGTGTGCGCCTGCGTCAAGCCCGCGAATCATTAGGGCTAACCCAGC
AGACTGTTGCAGAACGTCTG

Product: type IV pilus biogenesis/stability protein PilW

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKLTKLWRVCLVVSVLTGCSGTPPENTSQAVAGQTRLQLGLAYLAQGDLTAARKNLEKAVEADPQDYRTQLGMAFYAQRI
GENSAAEQRYQQAMKLAPGNGTVLNNYGAFLCSLGQYVSAQQQFSAAALLPDYGQVADSLENAGYCFLRANQDKQARVLL
SRALKYDPDKGEPLLAEAQRYFGEGNRAQAQLLLDVYQHTLPASAESLWLQIRFAALAGRQDSVQRYGKQLARSFPQSKQ
YQHFLANEY

Sequences:

>Translated_249_residues
MKLTKLWRVCLVVSVLTGCSGTPPENTSQAVAGQTRLQLGLAYLAQGDLTAARKNLEKAVEADPQDYRTQLGMAFYAQRI
GENSAAEQRYQQAMKLAPGNGTVLNNYGAFLCSLGQYVSAQQQFSAAALLPDYGQVADSLENAGYCFLRANQDKQARVLL
SRALKYDPDKGEPLLAEAQRYFGEGNRAQAQLLLDVYQHTLPASAESLWLQIRFAALAGRQDSVQRYGKQLARSFPQSKQ
YQHFLANEY
>Mature_249_residues
MKLTKLWRVCLVVSVLTGCSGTPPENTSQAVAGQTRLQLGLAYLAQGDLTAARKNLEKAVEADPQDYRTQLGMAFYAQRI
GENSAAEQRYQQAMKLAPGNGTVLNNYGAFLCSLGQYVSAQQQFSAAALLPDYGQVADSLENAGYCFLRANQDKQARVLL
SRALKYDPDKGEPLLAEAQRYFGEGNRAQAQLLLDVYQHTLPASAESLWLQIRFAALAGRQDSVQRYGKQLARSFPQSKQ
YQHFLANEY

Specific function: Unknown

COG id: COG3063

COG function: function code NU; Tfp pilus assembly protein PilF

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013360
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27525; Mature: 27525

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCC
>Mature Secondary Structure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HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]