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The map label for this gene is lolC [H]

Identifier: 153950693

GI number: 153950693

Start: 1858197

End: 1859399

Strand: Direct

Name: lolC [H]

Synonym: YpsIP31758_1600

Alternate gene names: 153950693

Gene position: 1858197-1859399 (Clockwise)

Preceding gene: 153947095

Following gene: 153949323

Centisome position: 39.34

GC content: 52.04

Gene sequence:

>1203_bases
ATGTATCAACCTGTCGCCCTATTTATCGGCCTGCGTTATATGCGTGGGCGTGCTTCTGACCGCTTCGGTCGGTTTGTTTC
GTGGCTTTCTACCATTGGCATTACGCTGGGGGTGATGGCTCTTATCACGGTATTGTCTGTGATGAATGGTTTTGAGCGTA
ATCTGCAAGATACGATTTTGGGGCTTATGCCACAGGCGCTGATTACCACACCACAAGGTTCTTTGGATCCAAACAAGATA
CCGGCTTCAACCCTAAAATCGCTGAGCGGTGTCAGTGATATTGTGCCGTTGACCACGGCGGATGTGGTGTTACAAAGTGC
GCGTAATTTGGCCGCCGGTGTGATGCTGGGGGTTGATCCACAGCAGCATGAACCATTGGCCAATTATTTGGTTAACGTGG
ATATAAAAGCGTTAGCGCCAGGTAGCTACAACATCATCCTCGGCGAGAAGTTAGCGGGCCAGCTCGGGGTTAAACGCGGT
GAAACACTGCGTTTGATGGTACCGAGCGCCAGCCAATTCACGCCAATGGGCCGTATTCCCAGCCAGCGTGTGTTTAATAT
TATCGGCACCTTTGCAGCGAATAGCGAAGTTGATGGCTATCAAATTTTGGTTAACCAGCAGGATGCATCACGCCTGATGC
GTTACCCTCTTGGGAATATTACCGGCTGGCGCTTATTCCTCTCGCAGCCGCTGTCGGTCGATAGCCTGAGCCAGCAGAGT
TTGCCAGAAGGCACCGTATGGAAAGACTGGCGTGACCGTAAAGGTGAGCTTTTCCAGGCCGTGCGGATGGAAAAGAACAT
GATGGGGTTATTGCTCAGTCTGATTATTGCTGTCGCAGCCTTTAATATCATTACGTCACTGGGGCTGTTAGTGATGGAAA
AACAAGGCGAGGTGGCGATTTTGCAAACCCAAGGGTTGAGTCGCCGGCAAATTATGTTGGTGTTTATGGTGCAAGGTGCC
ACCGCTGGGGTTATCGGCGCATTGCTAGGGGTAGGGCTGGGGGTTTTACTCGCCAGCCAATTGAACACCCTGATCCCTAT
TTTGGGCGTATTGATTGATGGCGCAACGCTACCCGTGGAGATTGACCCACTTCAGGTTACGGTCATTGCACTGCTAGCCA
TGGTGATCGCTCTATTGTCCACGCTGTACCCTTCCTGGCGCGCCGCCGCCGCACAACCCGCAGAGGCTTTACGCTATGAG
TAA

Upstream 100 bases:

>100_bases
TAAAAGCCGGAGATATAGACGGTTAATGGTTCCATAAAGCGGGAGTACCCTTTATTATCCTCGATCACTTTGTTTTAGCA
ACAGGATCTAAACAGATTTC

Downstream 100 bases:

>100_bases
TCATCCTTTATTACAATGTATAAACCTGTGCAAGCGTTATCAGGAAGGCCAACTGCATACTGATGTCCTGCGCAATGTCT
CTTTCGCTATCGAGCCTGGT

Product: outer membrane-specific lipoprotein transporter subunit LolC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MYQPVALFIGLRYMRGRASDRFGRFVSWLSTIGITLGVMALITVLSVMNGFERNLQDTILGLMPQALITTPQGSLDPNKI
PASTLKSLSGVSDIVPLTTADVVLQSARNLAAGVMLGVDPQQHEPLANYLVNVDIKALAPGSYNIILGEKLAGQLGVKRG
ETLRLMVPSASQFTPMGRIPSQRVFNIIGTFAANSEVDGYQILVNQQDASRLMRYPLGNITGWRLFLSQPLSVDSLSQQS
LPEGTVWKDWRDRKGELFQAVRMEKNMMGLLLSLIIAVAAFNIITSLGLLVMEKQGEVAILQTQGLSRRQIMLVFMVQGA
TAGVIGALLGVGLGVLLASQLNTLIPILGVLIDGATLPVEIDPLQVTVIALLAMVIALLSTLYPSWRAAAAQPAEALRYE

Sequences:

>Translated_400_residues
MYQPVALFIGLRYMRGRASDRFGRFVSWLSTIGITLGVMALITVLSVMNGFERNLQDTILGLMPQALITTPQGSLDPNKI
PASTLKSLSGVSDIVPLTTADVVLQSARNLAAGVMLGVDPQQHEPLANYLVNVDIKALAPGSYNIILGEKLAGQLGVKRG
ETLRLMVPSASQFTPMGRIPSQRVFNIIGTFAANSEVDGYQILVNQQDASRLMRYPLGNITGWRLFLSQPLSVDSLSQQS
LPEGTVWKDWRDRKGELFQAVRMEKNMMGLLLSLIIAVAAFNIITSLGLLVMEKQGEVAILQTQGLSRRQIMLVFMVQGA
TAGVIGALLGVGLGVLLASQLNTLIPILGVLIDGATLPVEIDPLQVTVIALLAMVIALLSTLYPSWRAAAAQPAEALRYE
>Mature_400_residues
MYQPVALFIGLRYMRGRASDRFGRFVSWLSTIGITLGVMALITVLSVMNGFERNLQDTILGLMPQALITTPQGSLDPNKI
PASTLKSLSGVSDIVPLTTADVVLQSARNLAAGVMLGVDPQQHEPLANYLVNVDIKALAPGSYNIILGEKLAGQLGVKRG
ETLRLMVPSASQFTPMGRIPSQRVFNIIGTFAANSEVDGYQILVNQQDASRLMRYPLGNITGWRLFLSQPLSVDSLSQQS
LPEGTVWKDWRDRKGELFQAVRMEKNMMGLLLSLIIAVAAFNIITSLGLLVMEKQGEVAILQTQGLSRRQIMLVFMVQGA
TAGVIGALLGVGLGVLLASQLNTLIPILGVLIDGATLPVEIDPLQVTVIALLAMVIALLSTLYPSWRAAAAQPAEALRYE

Specific function: Part of an ATP-dependent transport system lolCDE responsible for the release of lipoproteins targeted to the outer membrane from the inner membrane. Such a release is dependent of the sorting-signal (absence of an Asp at position 2 of the mature lipoprote

COG id: COG4591

COG function: function code M; ABC-type transport system, involved in lipoprotein release, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family. LolC/E subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787360, Length=400, Percent_Identity=78.25, Blast_Score=614, Evalue=1e-177,
Organism=Escherichia coli, GI1787362, Length=423, Percent_Identity=29.5508274231678, Blast_Score=141, Evalue=6e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003838
- InterPro:   IPR011925 [H]

Pfam domain/function: PF02687 FtsX [H]

EC number: NA

Molecular weight: Translated: 43162; Mature: 43162

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYQPVALFIGLRYMRGRASDRFGRFVSWLSTIGITLGVMALITVLSVMNGFERNLQDTIL
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLMPQALITTPQGSLDPNKIPASTLKSLSGVSDIVPLTTADVVLQSARNLAAGVMLGVDP
HHCCHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
QQHEPLANYLVNVDIKALAPGSYNIILGEKLAGQLGVKRGETLRLMVPSASQFTPMGRIP
HHCCCHHHHHEECEEEEECCCCEEEEECHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCC
SQRVFNIIGTFAANSEVDGYQILVNQQDASRLMRYPLGNITGWRLFLSQPLSVDSLSQQS
HHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCHHC
LPEGTVWKDWRDRKGELFQAVRMEKNMMGLLLSLIIAVAAFNIITSLGLLVMEKQGEVAI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEE
LQTQGLSRRQIMLVFMVQGATAGVIGALLGVGLGVLLASQLNTLIPILGVLIDGATLPVE
EECCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
IDPLQVTVIALLAMVIALLSTLYPSWRAAAAQPAEALRYE
ECHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHCCC
>Mature Secondary Structure
MYQPVALFIGLRYMRGRASDRFGRFVSWLSTIGITLGVMALITVLSVMNGFERNLQDTIL
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLMPQALITTPQGSLDPNKIPASTLKSLSGVSDIVPLTTADVVLQSARNLAAGVMLGVDP
HHCCHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
QQHEPLANYLVNVDIKALAPGSYNIILGEKLAGQLGVKRGETLRLMVPSASQFTPMGRIP
HHCCCHHHHHEECEEEEECCCCEEEEECHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCC
SQRVFNIIGTFAANSEVDGYQILVNQQDASRLMRYPLGNITGWRLFLSQPLSVDSLSQQS
HHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCHHC
LPEGTVWKDWRDRKGELFQAVRMEKNMMGLLLSLIIAVAAFNIITSLGLLVMEKQGEVAI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEE
LQTQGLSRRQIMLVFMVQGATAGVIGALLGVGLGVLLASQLNTLIPILGVLIDGATLPVE
EECCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
IDPLQVTVIALLAMVIALLSTLYPSWRAAAAQPAEALRYE
ECHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]