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The map label for this gene is rnfH

Identifier: 153949790

GI number: 153949790

Start: 3262580

End: 3262864

Strand: Reverse

Name: rnfH

Synonym: YpsIP31758_2891

Alternate gene names: 153949790

Gene position: 3262864-3262580 (Counterclockwise)

Preceding gene: 153947960

Following gene: 153947129

Centisome position: 69.08

GC content: 47.72

Gene sequence:

>285_bases
GTGCCTGATATTCGCGTTGAGGTTGTATATGCCTTACCTGAACGCCAATACTTGCGCACTGTATCTTTGGTGGTTGGCAG
TACTGTTGAGGATGCGATCAAGGCATCAGGCTTACTGGAGTTACGGCCAGACATTGACCTGGAAAAAAATAAAGTGGGTA
TCTATAGTCGCCCGGTAAAACTCGGTGACAAACTCAATGATGGTGATCGGGTTGAAATATATCGCCCATTAATAGCCGAC
CCCAAAGAGCTTCGCCGGCAGCGAGCTGAGCAGGCAAAAAAGTAA

Upstream 100 bases:

>100_bases
TTTACAAATAAGCTGATTGAATTGGCATTCGGTAAAATATTCAAGGAGTTGGCTGGGAATATGGTGCAGGCTTTCACTCA
ACGGGCTAAAGAGGTCTACA

Downstream 100 bases:

>100_bases
GGCACAATCAGCGCCTTATTTTTTGTTGTCACTCTGGGCAGCCATTGAAAGAGAAACGCGGACTATCTTGTGGCTGAGTT
AACATCAATAGGTTTAGAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 93

Protein sequence:

>94_residues
MPDIRVEVVYALPERQYLRTVSLVVGSTVEDAIKASGLLELRPDIDLEKNKVGIYSRPVKLGDKLNDGDRVEIYRPLIAD
PKELRRQRAEQAKK

Sequences:

>Translated_94_residues
MPDIRVEVVYALPERQYLRTVSLVVGSTVEDAIKASGLLELRPDIDLEKNKVGIYSRPVKLGDKLNDGDRVEIYRPLIAD
PKELRRQRAEQAKK
>Mature_93_residues
PDIRVEVVYALPERQYLRTVSLVVGSTVEDAIKASGLLELRPDIDLEKNKVGIYSRPVKLGDKLNDGDRVEIYRPLIADP
KELRRQRAEQAKK

Specific function: Unknown

COG id: COG2914

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0125 (rnfH) family

Homologues:

Organism=Escherichia coli, GI87082139, Length=93, Percent_Identity=76.3440860215054, Blast_Score=139, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFH_YERP3 (A7FKS6)

Other databases:

- EMBL:   CP000720
- RefSeq:   YP_001401854.1
- ProteinModelPortal:   A7FKS6
- SMR:   A7FKS6
- STRING:   A7FKS6
- GeneID:   5386580
- GenomeReviews:   CP000720_GR
- KEGG:   ypi:YpsIP31758_2891
- NMPDR:   fig|349747.3.peg.3814
- eggNOG:   COG2914
- HOGENOM:   HBG700644
- OMA:   PKDVRRK
- ProtClustDB:   PRK01777
- BioCyc:   YPSE349747:YPSIP31758_2891-MONOMER
- HAMAP:   MF_00460
- InterPro:   IPR005346

Pfam domain/function: PF03658 UPF0125

EC number: NA

Molecular weight: Translated: 10716; Mature: 10584

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDIRVEVVYALPERQYLRTVSLVVGSTVEDAIKASGLLELRPDIDLEKNKVGIYSRPVK
CCCCEEEEEEECCCHHHHHHHHHHHCCCHHHHHHHCCCEEECCCCCCCCCCCCCEECCCC
LGDKLNDGDRVEIYRPLIADPKELRRQRAEQAKK
CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
PDIRVEVVYALPERQYLRTVSLVVGSTVEDAIKASGLLELRPDIDLEKNKVGIYSRPVK
CCCEEEEEEECCCHHHHHHHHHHHCCCHHHHHHHCCCEEECCCCCCCCCCCCCEECCCC
LGDKLNDGDRVEIYRPLIADPKELRRQRAEQAKK
CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA