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The map label for this gene is pilR

Identifier: 153949596

GI number: 153949596

Start: 4204699

End: 4205799

Strand: Reverse

Name: pilR

Synonym: YpsIP31758_3730

Alternate gene names: NA

Gene position: 4205799-4204699 (Counterclockwise)

Preceding gene: 153949834

Following gene: 153950735

Centisome position: 89.04

GC content: 51.14

Gene sequence:

>1101_bases
ATGATTTTTCGTCCTGCCCGAAATATGTCTTTGGCGAAACGCCTACGGTATGAGTTGGTGCGCCATACTTTTAGTGCTCA
TTACCGCCTGGAGTTTTATGACGCATTGCATTTTTTACTGGGAAACGGCCACCCCTTAGGGGCTGCTTTGCGAATGATTG
CGGAGGTTCATACCGATTTTGGGAAGCTTTGGCATCCTTATGGCGATTTGGTGGATGACTGTCTGGAGTCGTTATCGGAT
AACAGTACGGGACGTATGCTTGAGGACGTGCTTGCCGCTTGGGGGCCATTGGAAGAGGCCGCTTTAATCAGCGCAGGTAT
GCGTAGTGGAAAATTGCCAGAAGCACTGCGACAAGCGGGCAAGTTGGTCGAAGCCCGCCGCCGTATTCTGACACTGGTTG
GCAAAATGTCCCTTTATCCACTGCTGTTGCTTAGTCTGGGCAGTGGCATGTTGGGCATCAATGGCATGTATTTGATCCCC
ACGCTGCGTAAGCTCTCTGATCCAGAAAACTGGCGCGGTGCATTAGGTTTTATGCATGCAGTGGCCAACGTTACGGACAA
GCAGAGTACCGTTGCGGTGGGGGTGATTGCCATCTTGGTTGGGCTGGTGCTGTGGTCTATTCCCCGTTGGCGTGGCCGGT
TACGCCGCTTTGCTGACAACATAATGCCCTGGTCGGTCTACAAAGATATTCAAGGGGCGGTGTTCCTGATGAATATGGCT
GCGCTGCTGAGAGCGAATGTGCAGACGTTAGAGGCGTTGCAGATCTTACTGCCGTTTTCTTCTCCCTGGCTGCAAGAACG
GCTTGACGCCATTATCGCCTGTATCGAACAGGGCGACCATCTGGGGAAGGCTTTGCGTAATAGCGGCTACGCATTCCCCA
GTAAAGAAGCGGCTAACTATCTCTCCTTGCTGACCGAAGGTGATGGCGCGCCAGATATTATAAGTCGTTACGGTGATCGC
TGGTTGGAACAAACGCTGGAGCGAGTCAACAAGCGGGTCATTGGCGTCATGTTTTTCTCTCTGTTACTGATTTTCAGTTT
CTTCTTACTCATCTTGTCTATGGTGATGCAAATTCAGGATATGACCAGTGACTCAATGTAA

Upstream 100 bases:

>100_bases
CATCAATTGGCTGCGGGTCTGGTTGATCCCCTTGATGCAGATTTGATCTGTCCACTAGATGAAGATCACCTCTTGACCGG
TGAGGTGCCTGATGTCTGAG

Downstream 100 bases:

>100_bases
TAAGGGATCCGATAATGTCATTACCAGTAGCATCCAGAAAACAACCCCATAGTGGCTGGGGTATCCTTGAGAGCGGTGGC
GTAGCGCTTGTAGTCATCGT

Product: type IV pilus biogenesis protein PilR

Products: NA

Alternate protein names: Integral Membrane Protein; Type IV Pilus Biogenesis Protein; PilR Type IV Pilus Biosynthesis Protein; Type IV Pilus Integral Membrane Protein; Type IV Pilus Biogenesis Protein PilR; Type II Secretion System; Type IV Pilus Integral Inner Membrane Protein; Type II Secretion System F Domain Protein; Transmembrane Protein; Type IV Pilus Protein; Type IV Pilus Biosynthesis Protein; PilR Protein; General Protein Secretion Protein BfpE; Type IV Secretion System Protein PilR; Component Of Type II Secretion Apparatus; Type IV Pilus Transmembrane Protein PilR; Type II Secretory Pathway Component PulF; Type IV B Pilus Protein; PilV Type IV Pilus Minor Pilin Subunit Shufflon Protein; Conjugal Transfer Protein; Type II Secretion System Protein F; PilR-Like Integral Membrane Protein

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MIFRPARNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWHPYGDLVDDCLESLSD
NSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEARRRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIP
TLRKLSDPENWRGALGFMHAVANVTDKQSTVAVGVIAILVGLVLWSIPRWRGRLRRFADNIMPWSVYKDIQGAVFLMNMA
ALLRANVQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLLTEGDGAPDIISRYGDR
WLEQTLERVNKRVIGVMFFSLLLIFSFFLLILSMVMQIQDMTSDSM

Sequences:

>Translated_366_residues
MIFRPARNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWHPYGDLVDDCLESLSD
NSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEARRRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIP
TLRKLSDPENWRGALGFMHAVANVTDKQSTVAVGVIAILVGLVLWSIPRWRGRLRRFADNIMPWSVYKDIQGAVFLMNMA
ALLRANVQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLLTEGDGAPDIISRYGDR
WLEQTLERVNKRVIGVMFFSLLLIFSFFLLILSMVMQIQDMTSDSM
>Mature_366_residues
MIFRPARNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWHPYGDLVDDCLESLSD
NSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEARRRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIP
TLRKLSDPENWRGALGFMHAVANVTDKQSTVAVGVIAILVGLVLWSIPRWRGRLRRFADNIMPWSVYKDIQGAVFLMNMA
ALLRANVQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLLTEGDGAPDIISRYGDR
WLEQTLERVNKRVIGVMFFSLLLIFSFFLLILSMVMQIQDMTSDSM

Specific function: Unknown

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41053; Mature: 41053

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCCC
>Mature Secondary Structure
MIFRPARNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
GKLWHPYGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAG
HHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHH
KLVEARRRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
VANVTDKQSTVAVGVIAILVGLVLWSIPRWRGRLRRFADNIMPWSVYKDIQGAVFLMNMA
HHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
ALLRANVQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANY
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHH
LSLLTEGDGAPDIISRYGDRWLEQTLERVNKRVIGVMFFSLLLIFSFFLLILSMVMQIQD
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MTSDSM
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA