| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is ynfE [H]
Identifier: 153949485
GI number: 153949485
Start: 1571644
End: 1574070
Strand: Reverse
Name: ynfE [H]
Synonym: YpsIP31758_1344
Alternate gene names: 153949485
Gene position: 1574070-1571644 (Counterclockwise)
Preceding gene: 153947090
Following gene: 153949240
Centisome position: 33.33
GC content: 47.55
Gene sequence:
>2427_bases ATGAATAACAATAAAACACCGCTCACCGGCTCACTGAGTCGTCGTGAATTTATTCAAACATCCGCCGTAGTGACCGGGGC TGCGGCAATTGCCGGTTCAATCGCCCTCCCATTCTCCGTCCATGCTGCGGCTTCAGAACATGCCCCCACGGCGGCTGAAG AGAGCATTAAATACAGTGCTTGTCTGGTTAACTGTGGCAGCCGCTGTCCGCTAAAAGTTCATGTTAAAAATGGTGAAATA ATTAAAATTGCTAATGAAGCCATTTATGATGATTCCACCTTTGGCTTACACCAAATTCGCCCCTGCTTACGTGGCCGTTC AGTACGATGGAAAACCTATAATCCGGATCGGGTTAAATATCCGATGTTGCGAGTGGGTAAACGCGGTGAAGGTAAATTCA AGCGTATCAGTTGGGATGAAGCCACAACTATAGTTGCGGATAATCTGAAAAAAACGATTGTTCAATACGGCAACGAAGCG ATTTATTATCAATATGGCTCTGGTTCAACTGGGGCTAATTTACAAGGCCGCAATGCCTGTAAACGTATGTTGAGTTTGAT CGGCGGTTATCTTGATCAGCACGGTACTTATTCTACCGCCCAAATCAATACCGTCATGCCTTATGTCTACGGCAACTTAG ATGAAACACTACTGGACGAAATTAAAAATTCTGATCTGGTGGTGATGTTTGGTCACAATCTGGCAGAAACACGGATGTCA GGCGGTGGGCAATATATTGAAACGGTTCAGGCGTTGGGTCAAAGCCGAGCCAAAGTCATTATTATTGACCCACGCATGAC CGACAGTGTGACCACCCTTAACGCCGAATGGATCCCGATATTCCCAGGGACCGATGCGGCACTGGTCGCCGCGCTGGGGC ATGTTTTAATTAAAGAGAATCTGACTGACGAACGTTTCCTGCAACAATATTGTGTCGGTTGGGATGCCACCACATTGCCC GCATCGGCCCCAGCTAACGGATCGTATAAAGATTATATTTTAGGTCTGGGTGCTGACGAAACCGAAAAAACACCAGAATG GGCCAGTGAGATAACCGGTATTTCACCAACACGTATTATTCAATTAGCCAGAGAACTGGGTAATGCCCGCGCAGCCTGGA TTTCACAGGGTTGGGGAATTCAACGCACAGCGAACGGGGAGCAAGCGTCCCGCTCGATTATGATGCTCCCATTAATGACC GGTAATATTGGCCGTGCCGGAACCAATACCGGTGCCTGGGGTGGCAACGTAAAATACCCGGTTCCCGGATTCAGCATTCC CAATCCAGTCAAAACGGCCATTCCTTGCTTTATGTGGACCGATGCTATTTTCCGCGGCACTGAAATGACCGCTAAAAATG CCCATGTGAAAAATAAAGAAAAACTGGATACCAATATTAAGTTTCTTTGGAACTACGCCAGTAATGTTATAGCAAATCAG CACTCTGATCTGAATAAAACCAATACTATTTTGCAAGATGAGTCATTGTGCGAATTTATTTTGGTCTGGGAAAACCATAT GACCAATTCGGCGAAATACGCGGATTTATTATTGCCAGACGTCACGTCGGTTGAATCAAATGACCTGATTGATAACTCCT ATGCCAGTGGCGCTTATCACTATGTCACCCGGATGCAAAATACCATTGAGCCGCTGTGGGAATGCCGCCCCTCATACGAT GTATTAGCCGAGATTGCCACCAAATTAGGCGTGGGGGATGCCTTTACTGAAGGACATACCCAGCAAGAATGGATTGAAAT CAGCTATAACAAAATGCGTGATAAAAATCCGGCGCTGCCGCCTTTCAGTGACACCCATAACAAAGGCATTATTGACCGTA TTTTTGCTGACAGTAGCCAATATATCGCGTTAAAAGATTTCCGCGATGATCCAGTAAATAACCCGTTAAAAACCCCATCA GGCAAGATTGAGATCTATTCCGAAGCACTGGCAACACTCGCACTCGAGTGGCAGCTGGCGCCGGGTGATCGCATTACCGC AGTGGCTGAATATTGTCCGACCCCTGAGGGCGTCAGTGATCAGGAGACCCTGAAGAGCTACCCTCTGCAAATGACCGGTT TCCATGTTAAAGGCCATACCCACTCAACCTATTACAATGTCGCGATGCTGCGCGAAGCGGTGCCTCATCAATTCTGGATG AACCCGATTGATGCACAGGCGCGTGGCATACAGCAAGGCGAGCGGGTCGAAATATTTAATAGCCGTGGCCGTATCCATAT TGCGGTCAAAATTACTGAGCGGGTATTACCGGGGGTTATTGCTGTGCCACAAGGGGCATGGCGTAATCTCAACAAGGACG GTATCGACGTGGGTGGCTGTATCAATACGTTGACGACACAACGCCCTTCGCCATTGGCGAAAGGTAATCCTCAACACACC AACCTCGTTGAAGTAAAACGTGCATAA
Upstream 100 bases:
>100_bases CCAGTTCTATACCCAAGTCATTGGCATTGTTGCTAACACCACGACAACGTCAAGTAAAAAAGGGATGTCCTGCTCTTTTA TTTCCGCAAGGATAATGTTG
Downstream 100 bases:
>100_bases GGAGCTGAATAATGAAGCAATATGGTTTTTTTGTTGACTCCACCAAGTGCACGGGGTGTAAAACCTGCCAAGTCAGTTGT AAGGACGAAAAGAATCTGGA
Product: anaerobic dimethyl sulfoxide reductase, A subunit
Products: NA
Alternate protein names: DMSO reductase [H]
Number of amino acids: Translated: 808; Mature: 808
Protein sequence:
>808_residues MNNNKTPLTGSLSRREFIQTSAVVTGAAAIAGSIALPFSVHAAASEHAPTAAEESIKYSACLVNCGSRCPLKVHVKNGEI IKIANEAIYDDSTFGLHQIRPCLRGRSVRWKTYNPDRVKYPMLRVGKRGEGKFKRISWDEATTIVADNLKKTIVQYGNEA IYYQYGSGSTGANLQGRNACKRMLSLIGGYLDQHGTYSTAQINTVMPYVYGNLDETLLDEIKNSDLVVMFGHNLAETRMS GGGQYIETVQALGQSRAKVIIIDPRMTDSVTTLNAEWIPIFPGTDAALVAALGHVLIKENLTDERFLQQYCVGWDATTLP ASAPANGSYKDYILGLGADETEKTPEWASEITGISPTRIIQLARELGNARAAWISQGWGIQRTANGEQASRSIMMLPLMT GNIGRAGTNTGAWGGNVKYPVPGFSIPNPVKTAIPCFMWTDAIFRGTEMTAKNAHVKNKEKLDTNIKFLWNYASNVIANQ HSDLNKTNTILQDESLCEFILVWENHMTNSAKYADLLLPDVTSVESNDLIDNSYASGAYHYVTRMQNTIEPLWECRPSYD VLAEIATKLGVGDAFTEGHTQQEWIEISYNKMRDKNPALPPFSDTHNKGIIDRIFADSSQYIALKDFRDDPVNNPLKTPS GKIEIYSEALATLALEWQLAPGDRITAVAEYCPTPEGVSDQETLKSYPLQMTGFHVKGHTHSTYYNVAMLREAVPHQFWM NPIDAQARGIQQGERVEIFNSRGRIHIAVKITERVLPGVIAVPQGAWRNLNKDGIDVGGCINTLTTQRPSPLAKGNPQHT NLVEVKRA
Sequences:
>Translated_808_residues MNNNKTPLTGSLSRREFIQTSAVVTGAAAIAGSIALPFSVHAAASEHAPTAAEESIKYSACLVNCGSRCPLKVHVKNGEI IKIANEAIYDDSTFGLHQIRPCLRGRSVRWKTYNPDRVKYPMLRVGKRGEGKFKRISWDEATTIVADNLKKTIVQYGNEA IYYQYGSGSTGANLQGRNACKRMLSLIGGYLDQHGTYSTAQINTVMPYVYGNLDETLLDEIKNSDLVVMFGHNLAETRMS GGGQYIETVQALGQSRAKVIIIDPRMTDSVTTLNAEWIPIFPGTDAALVAALGHVLIKENLTDERFLQQYCVGWDATTLP ASAPANGSYKDYILGLGADETEKTPEWASEITGISPTRIIQLARELGNARAAWISQGWGIQRTANGEQASRSIMMLPLMT GNIGRAGTNTGAWGGNVKYPVPGFSIPNPVKTAIPCFMWTDAIFRGTEMTAKNAHVKNKEKLDTNIKFLWNYASNVIANQ HSDLNKTNTILQDESLCEFILVWENHMTNSAKYADLLLPDVTSVESNDLIDNSYASGAYHYVTRMQNTIEPLWECRPSYD VLAEIATKLGVGDAFTEGHTQQEWIEISYNKMRDKNPALPPFSDTHNKGIIDRIFADSSQYIALKDFRDDPVNNPLKTPS GKIEIYSEALATLALEWQLAPGDRITAVAEYCPTPEGVSDQETLKSYPLQMTGFHVKGHTHSTYYNVAMLREAVPHQFWM NPIDAQARGIQQGERVEIFNSRGRIHIAVKITERVLPGVIAVPQGAWRNLNKDGIDVGGCINTLTTQRPSPLAKGNPQHT NLVEVKRA >Mature_808_residues MNNNKTPLTGSLSRREFIQTSAVVTGAAAIAGSIALPFSVHAAASEHAPTAAEESIKYSACLVNCGSRCPLKVHVKNGEI IKIANEAIYDDSTFGLHQIRPCLRGRSVRWKTYNPDRVKYPMLRVGKRGEGKFKRISWDEATTIVADNLKKTIVQYGNEA IYYQYGSGSTGANLQGRNACKRMLSLIGGYLDQHGTYSTAQINTVMPYVYGNLDETLLDEIKNSDLVVMFGHNLAETRMS GGGQYIETVQALGQSRAKVIIIDPRMTDSVTTLNAEWIPIFPGTDAALVAALGHVLIKENLTDERFLQQYCVGWDATTLP ASAPANGSYKDYILGLGADETEKTPEWASEITGISPTRIIQLARELGNARAAWISQGWGIQRTANGEQASRSIMMLPLMT GNIGRAGTNTGAWGGNVKYPVPGFSIPNPVKTAIPCFMWTDAIFRGTEMTAKNAHVKNKEKLDTNIKFLWNYASNVIANQ HSDLNKTNTILQDESLCEFILVWENHMTNSAKYADLLLPDVTSVESNDLIDNSYASGAYHYVTRMQNTIEPLWECRPSYD VLAEIATKLGVGDAFTEGHTQQEWIEISYNKMRDKNPALPPFSDTHNKGIIDRIFADSSQYIALKDFRDDPVNNPLKTPS GKIEIYSEALATLALEWQLAPGDRITAVAEYCPTPEGVSDQETLKSYPLQMTGFHVKGHTHSTYYNVAMLREAVPHQFWM NPIDAQARGIQQGERVEIFNSRGRIHIAVKITERVLPGVIAVPQGAWRNLNKDGIDVGGCINTLTTQRPSPLAKGNPQHT NLVEVKRA
Specific function: Terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787870, Length=805, Percent_Identity=52.6708074534161, Blast_Score=830, Evalue=0.0, Organism=Escherichia coli, GI87081797, Length=810, Percent_Identity=51.2345679012346, Blast_Score=810, Evalue=0.0, Organism=Escherichia coli, GI171474008, Length=806, Percent_Identity=49.8759305210918, Blast_Score=781, Evalue=0.0, Organism=Escherichia coli, GI145693196, Length=751, Percent_Identity=30.0932090545939, Blast_Score=273, Evalue=2e-74, Organism=Escherichia coli, GI87081994, Length=865, Percent_Identity=28.7861271676301, Blast_Score=271, Evalue=1e-73, Organism=Escherichia coli, GI1787231, Length=757, Percent_Identity=27.2126816380449, Blast_Score=251, Evalue=2e-67, Organism=Escherichia coli, GI3868721, Length=780, Percent_Identity=24.8717948717949, Blast_Score=148, Evalue=2e-36, Organism=Escherichia coli, GI1788534, Length=425, Percent_Identity=24.2352941176471, Blast_Score=66, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011888 - InterPro: IPR009010 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 - InterPro: IPR006311 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: 1.8.99.- [C]
Molecular weight: Translated: 89163; Mature: 89163
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: PS00551 MOLYBDOPTERIN_PROK_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNNKTPLTGSLSRREFIQTSAVVTGAAAIAGSIALPFSVHAAASEHAPTAAEESIKYSA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEECCEEEECCCCCCCCCHHHHHCEEEE CLVNCGSRCPLKVHVKNGEIIKIANEAIYDDSTFGLHQIRPCLRGRSVRWKTYNPDRVKY EEEECCCCCCEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCEEC PMLRVGKRGEGKFKRISWDEATTIVADNLKKTIVQYGNEAIYYQYGSGSTGANLQGRNAC HHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHH KRMLSLIGGYLDQHGTYSTAQINTVMPYVYGNLDETLLDEIKNSDLVVMFGHNLAETRMS HHHHHHHHHHHHCCCCCCEEEEEEECCHHCCCCCHHHHHHHCCCCEEEEECCCHHHHHHC GGGQYIETVQALGQSRAKVIIIDPRMTDSVTTLNAEWIPIFPGTDAALVAALGHVLIKEN CCCHHHHHHHHHCCCCCEEEEECCCCCCCEEEECCCEEEECCCCCHHHHHHHHHHHHHCC LTDERFLQQYCVGWDATTLPASAPANGSYKDYILGLGADETEKTPEWASEITGISPTRII CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHH QLARELGNARAAWISQGWGIQRTANGEQASRSIMMLPLMTGNIGRAGTNTGAWGGNVKYP HHHHHHCCCCEEHHHCCCCCEECCCCHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC VPGFSIPNPVKTAIPCFMWTDAIFRGTEMTAKNAHVKNKEKLDTNIKFLWNYASNVIANQ CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCEEEEEHHHHHHHCC HSDLNKTNTILQDESLCEFILVWENHMTNSAKYADLLLPDVTSVESNDLIDNSYASGAYH CCCCCHHHCEECCCCCEEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHH YVTRMQNTIEPLWECRPSYDVLAEIATKLGVGDAFTEGHTQQEWIEISYNKMRDKNPALP HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHCCCCCHHHHEEEEHHHCCCCCCCCC PFSDTHNKGIIDRIFADSSQYIALKDFRDDPVNNPLKTPSGKIEIYSEALATLALEWQLA CCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCEEEHHHHHEEEEEEEEEC PGDRITAVAEYCPTPEGVSDQETLKSYPLQMTGFHVKGHTHSTYYNVAMLREAVPHQFWM CCCCCHHHHHHCCCCCCCCHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCHHHCC NPIDAQARGIQQGERVEIFNSRGRIHIAVKITERVLPGVIAVPQGAWRNLNKDGIDVGGC CCCCHHHHCCCCCCEEEEECCCCEEEEEEEEECHHCCCEEECCCHHHHCCCCCCCCCCHH INTLTTQRPSPLAKGNPQHTNLVEVKRA HHHHHCCCCCCCCCCCCCCCCEEEEECC >Mature Secondary Structure MNNNKTPLTGSLSRREFIQTSAVVTGAAAIAGSIALPFSVHAAASEHAPTAAEESIKYSA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEECCEEEECCCCCCCCCHHHHHCEEEE CLVNCGSRCPLKVHVKNGEIIKIANEAIYDDSTFGLHQIRPCLRGRSVRWKTYNPDRVKY EEEECCCCCCEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCEEC PMLRVGKRGEGKFKRISWDEATTIVADNLKKTIVQYGNEAIYYQYGSGSTGANLQGRNAC HHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHH KRMLSLIGGYLDQHGTYSTAQINTVMPYVYGNLDETLLDEIKNSDLVVMFGHNLAETRMS HHHHHHHHHHHHCCCCCCEEEEEEECCHHCCCCCHHHHHHHCCCCEEEEECCCHHHHHHC GGGQYIETVQALGQSRAKVIIIDPRMTDSVTTLNAEWIPIFPGTDAALVAALGHVLIKEN CCCHHHHHHHHHCCCCCEEEEECCCCCCCEEEECCCEEEECCCCCHHHHHHHHHHHHHCC LTDERFLQQYCVGWDATTLPASAPANGSYKDYILGLGADETEKTPEWASEITGISPTRII CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHH QLARELGNARAAWISQGWGIQRTANGEQASRSIMMLPLMTGNIGRAGTNTGAWGGNVKYP HHHHHHCCCCEEHHHCCCCCEECCCCHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC VPGFSIPNPVKTAIPCFMWTDAIFRGTEMTAKNAHVKNKEKLDTNIKFLWNYASNVIANQ CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCEEEEEHHHHHHHCC HSDLNKTNTILQDESLCEFILVWENHMTNSAKYADLLLPDVTSVESNDLIDNSYASGAYH CCCCCHHHCEECCCCCEEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHH YVTRMQNTIEPLWECRPSYDVLAEIATKLGVGDAFTEGHTQQEWIEISYNKMRDKNPALP HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHCCCCCHHHHEEEEHHHCCCCCCCCC PFSDTHNKGIIDRIFADSSQYIALKDFRDDPVNNPLKTPSGKIEIYSEALATLALEWQLA CCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCEEEHHHHHEEEEEEEEEC PGDRITAVAEYCPTPEGVSDQETLKSYPLQMTGFHVKGHTHSTYYNVAMLREAVPHQFWM CCCCCHHHHHHCCCCCCCCHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCHHHCC NPIDAQARGIQQGERVEIFNSRGRIHIAVKITERVLPGVIAVPQGAWRNLNKDGIDVGGC CCCCHHHHCCCCCCEEEEECCCCEEEEEEEEECHHCCCEEECCCHHHHCCCCCCCCCCHH INTLTTQRPSPLAKGNPQHTNLVEVKRA HHHHHCCCCCCCCCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: May Bind 4Fe-4S Cluster. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]