| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is fimD [H]
Identifier: 153949224
GI number: 153949224
Start: 190957
End: 193608
Strand: Reverse
Name: fimD [H]
Synonym: YpsIP31758_0169
Alternate gene names: 153949224
Gene position: 193608-190957 (Counterclockwise)
Preceding gene: 153947436
Following gene: 153950896
Centisome position: 4.1
GC content: 47.17
Gene sequence:
>2652_bases ATGGTGCAGGCACGGGTCATTCTGAAAAAAAATTTCTCAGGCCGTAGGAAAGCATTAACATTATGTATAACTTTAATTTT ACATATTGATACTGCTTTTGGGCAGGAAGAACCACAAAATTTCGAATTTGATGAATCTCTTTTTTTAGGGACAAAATATG CATCAGGTTTGACCCAGCTTAATAAAAAAAATTCTATAACTGCCGGGAATTATGATGCTGTAGATGTTTTGGTTAATAAC AAATTGTTCAAACGTATGAGCGTGCAATTTATTAAAGATGCCAACTCATCTGAGGTTTATCCCTGTCTGAGCGACGAGTT ATTAACCGCGGCTGGCGTTGAACTGGGTAGAGAAAATAGCACCCCTCCCAAAGAACCCCATGTTACCGAGGCTAATACTC CCATAACTGAAACTCACGCCCCAACGAACCAATGTTTACCTCTGTCTACGCGGGTAAAAGGGGCATCCTTTCGATTTGAT CAGGCTAAATTACGTTTAGAGCTTTCGATTCCACAGGCTCTATTACAAAAACGGCCCAGGGGCTACATTGAGCGGGCGGA ATGGCAGGAAGGCGAAAAACTCGCATTCATTAACTACAGCGCCAACGCTTATCGCAGTGATACTCGCGGCCAGCAAAAGA GAACCTCTGATTTTGGTTTTATTGGCCTTAAAAGTGGGATCAATCTGGGATTGTGGCAAGTACGCCAGCAATCGAACGTC CGCTACGCCAGTAATGATAGTGGCAGCGATACCCAGTGGAATAGCATCCGCACTTATGTGCAACGCCCGATCCCACAGTT GGATAGCCAGTTAACGTTAGGCGAAACTTTCACTGACAGTACATTATTTGGCAGCATGTCGTTCCTCGGTGCGAAAATGG CTACCGACCAACGTATGTGGCCAGTGTCAATGCGCGGTTTCTCCCCAGAGGTCCGGGGTGTCGCCAGTACCAACGCACGC GTTATTATTCGTCAGAATGGACGTGAAATTTATGAGACGAACGTCGCTCCTGGCCCGTTCGTTATTAACGATTTGTTCAG CACCAGTAGCCAAGGCGACCTTAATGTTGAGGTTATTGAGGCCAATGGTAGCCGCTCGACATTTACGGTGCCATTCAGTG CCGTTCCTGATTCAATGCGCCCAGGCGTTAGCCGCTATAATGCGGTGATCGGGGAATCACGCGATTTCACCAATATTGAT AATTATTTCACTGACTTCACCTATGAACGCGGCCTCACCAATCAACTGACGGCCAACAGTGGTGTCCGTTTAGCAAAAGA CTACACGGCATTACTTGCCGGTGGCGTATTAGGGACACCGGTCGGTGCTTTGGGCCTCAATGCCACCTATTCTCACGCCA AAGTTGAAAATGATAAAACGCAAGATGGTTGGCGGATGCAGGCCACCTATAGCCAGACCTTTAATCAAACCGGAACCACG TTCTCTTTAGCCGGGTATCGTTACTCAACGAAAGGGTATCGCGATTTAAATGATGTGTTCGGGGTGCGTTCGATGCAAAA AAACGGGGGAACGTGGGATTCATCAACCTATAAACAGCGTAGCCAATTCACCACTACTATTAATCAAGACCTCGGTAATT GGGGCCAGTTATACGCCTCTGCCTCAACCAGTGATTATTATAACGATACGGCGAGAGATACCCAGTTACAGCTAGGCTAT TCAAATAGTTATCAGCAAATCAGTTACAATTTGGCTGTCAGCCGCCAGCGCAGTGTTTATACCTCCACTCTGTATAACTG GGATAGCCCTGATACCGACGAGACGGCAACCACCACGCGCTACGGTAATACCGAGAACATCGCAACATTCACCGTTTCTA TTCCACTGAATATTGGTAGCAACAACCAATATCTATCAATGTCAGCCAGCCGTAATCCGAAAAGCGGTAATAACTATCAA ACATCATTATCAGGCACCGCCGGTGAGCGAAATTCCTTCAACTATGCATTAAATGCAGGCTATGACGACAGCAACTTCGG TAGTAGCTCAAATAATTGGGGGGCCAACGTACAGAAGCAATTCCCCAATGCTACCGTTAATGGCAGCTATTCTCGTGGCA ATAATTACACCCAATATGGCGCAGGCGCTCGTGGTGCGGCGGTAATACATCGACAAGGCGTGACTCTGGGCCCTTATCTG GGTGAGACCTTTGGTTTAATTGAAGCTAATGGTGCTCAAGGGGCGACAGTTCGTAATGCCCAAGGGGCAAGAATTGATAG TAACGGTTTTGCTCTGGTGCCCGCGCTAACGCCTTATAACTACAACACAATAGGGCTGGATACCAAGGGGATTAACCGTA ACACCGAGTTGAAAGAGAATCAGGGCCGTGTCGTCCCTTATGCCGGGGCAGCGGTAAAAGTGAAATTTGAAACACTGACT GGCTATGCGGTGTTAATTCAAGCCGAAGGTGAGGGGTTACCACTGGGTGCCGATGTGTATAACAGCAAAGATGAACTGGT TGGAATGGTAGGTCAGGGGAATCAGATCTACGCACGGATAGCCGATAACAAAGGTACACTTGATGTCCGTTGGGGCGAAA GCAGCGGTGATCAGTGTCAATTACCTTATGCTTTTAATCGCCAGGATACCGAGCAAGATATCATTCATATAACCGCGAGT TGCCGCCGCTAA
Upstream 100 bases:
>100_bases CTCGTCAGCAACGATTAACTTTCTGATCATGAATGATTTCGGCGGGCAAGATGCCGGTAGCTATCGTATTTAGCAGTAAC TTTCCGGTAAAGGAATATTT
Downstream 100 bases:
>100_bases CCCTATGAGAAAAATAATGTTAAGACCAACAAAGCCATTAATATCTTCCGGCATTTCGCAGTCTACCACTGCGGTCTATT GCCGCCGCCCATATTTTCTT
Product: fimbrial usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 883; Mature: 883
Protein sequence:
>883_residues MVQARVILKKNFSGRRKALTLCITLILHIDTAFGQEEPQNFEFDESLFLGTKYASGLTQLNKKNSITAGNYDAVDVLVNN KLFKRMSVQFIKDANSSEVYPCLSDELLTAAGVELGRENSTPPKEPHVTEANTPITETHAPTNQCLPLSTRVKGASFRFD QAKLRLELSIPQALLQKRPRGYIERAEWQEGEKLAFINYSANAYRSDTRGQQKRTSDFGFIGLKSGINLGLWQVRQQSNV RYASNDSGSDTQWNSIRTYVQRPIPQLDSQLTLGETFTDSTLFGSMSFLGAKMATDQRMWPVSMRGFSPEVRGVASTNAR VIIRQNGREIYETNVAPGPFVINDLFSTSSQGDLNVEVIEANGSRSTFTVPFSAVPDSMRPGVSRYNAVIGESRDFTNID NYFTDFTYERGLTNQLTANSGVRLAKDYTALLAGGVLGTPVGALGLNATYSHAKVENDKTQDGWRMQATYSQTFNQTGTT FSLAGYRYSTKGYRDLNDVFGVRSMQKNGGTWDSSTYKQRSQFTTTINQDLGNWGQLYASASTSDYYNDTARDTQLQLGY SNSYQQISYNLAVSRQRSVYTSTLYNWDSPDTDETATTTRYGNTENIATFTVSIPLNIGSNNQYLSMSASRNPKSGNNYQ TSLSGTAGERNSFNYALNAGYDDSNFGSSSNNWGANVQKQFPNATVNGSYSRGNNYTQYGAGARGAAVIHRQGVTLGPYL GETFGLIEANGAQGATVRNAQGARIDSNGFALVPALTPYNYNTIGLDTKGINRNTELKENQGRVVPYAGAAVKVKFETLT GYAVLIQAEGEGLPLGADVYNSKDELVGMVGQGNQIYARIADNKGTLDVRWGESSGDQCQLPYAFNRQDTEQDIIHITAS CRR
Sequences:
>Translated_883_residues MVQARVILKKNFSGRRKALTLCITLILHIDTAFGQEEPQNFEFDESLFLGTKYASGLTQLNKKNSITAGNYDAVDVLVNN KLFKRMSVQFIKDANSSEVYPCLSDELLTAAGVELGRENSTPPKEPHVTEANTPITETHAPTNQCLPLSTRVKGASFRFD QAKLRLELSIPQALLQKRPRGYIERAEWQEGEKLAFINYSANAYRSDTRGQQKRTSDFGFIGLKSGINLGLWQVRQQSNV RYASNDSGSDTQWNSIRTYVQRPIPQLDSQLTLGETFTDSTLFGSMSFLGAKMATDQRMWPVSMRGFSPEVRGVASTNAR VIIRQNGREIYETNVAPGPFVINDLFSTSSQGDLNVEVIEANGSRSTFTVPFSAVPDSMRPGVSRYNAVIGESRDFTNID NYFTDFTYERGLTNQLTANSGVRLAKDYTALLAGGVLGTPVGALGLNATYSHAKVENDKTQDGWRMQATYSQTFNQTGTT FSLAGYRYSTKGYRDLNDVFGVRSMQKNGGTWDSSTYKQRSQFTTTINQDLGNWGQLYASASTSDYYNDTARDTQLQLGY SNSYQQISYNLAVSRQRSVYTSTLYNWDSPDTDETATTTRYGNTENIATFTVSIPLNIGSNNQYLSMSASRNPKSGNNYQ TSLSGTAGERNSFNYALNAGYDDSNFGSSSNNWGANVQKQFPNATVNGSYSRGNNYTQYGAGARGAAVIHRQGVTLGPYL GETFGLIEANGAQGATVRNAQGARIDSNGFALVPALTPYNYNTIGLDTKGINRNTELKENQGRVVPYAGAAVKVKFETLT GYAVLIQAEGEGLPLGADVYNSKDELVGMVGQGNQIYARIADNKGTLDVRWGESSGDQCQLPYAFNRQDTEQDIIHITAS CRR >Mature_883_residues MVQARVILKKNFSGRRKALTLCITLILHIDTAFGQEEPQNFEFDESLFLGTKYASGLTQLNKKNSITAGNYDAVDVLVNN KLFKRMSVQFIKDANSSEVYPCLSDELLTAAGVELGRENSTPPKEPHVTEANTPITETHAPTNQCLPLSTRVKGASFRFD QAKLRLELSIPQALLQKRPRGYIERAEWQEGEKLAFINYSANAYRSDTRGQQKRTSDFGFIGLKSGINLGLWQVRQQSNV RYASNDSGSDTQWNSIRTYVQRPIPQLDSQLTLGETFTDSTLFGSMSFLGAKMATDQRMWPVSMRGFSPEVRGVASTNAR VIIRQNGREIYETNVAPGPFVINDLFSTSSQGDLNVEVIEANGSRSTFTVPFSAVPDSMRPGVSRYNAVIGESRDFTNID NYFTDFTYERGLTNQLTANSGVRLAKDYTALLAGGVLGTPVGALGLNATYSHAKVENDKTQDGWRMQATYSQTFNQTGTT FSLAGYRYSTKGYRDLNDVFGVRSMQKNGGTWDSSTYKQRSQFTTTINQDLGNWGQLYASASTSDYYNDTARDTQLQLGY SNSYQQISYNLAVSRQRSVYTSTLYNWDSPDTDETATTTRYGNTENIATFTVSIPLNIGSNNQYLSMSASRNPKSGNNYQ TSLSGTAGERNSFNYALNAGYDDSNFGSSSNNWGANVQKQFPNATVNGSYSRGNNYTQYGAGARGAAVIHRQGVTLGPYL GETFGLIEANGAQGATVRNAQGARIDSNGFALVPALTPYNYNTIGLDTKGINRNTELKENQGRVVPYAGAAVKVKFETLT GYAVLIQAEGEGLPLGADVYNSKDELVGMVGQGNQIYARIADNKGTLDVRWGESSGDQCQLPYAFNRQDTEQDIIHITAS CRR
Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1787172, Length=893, Percent_Identity=30.3471444568869, Blast_Score=375, Evalue=1e-105, Organism=Escherichia coli, GI1790772, Length=858, Percent_Identity=30.4195804195804, Blast_Score=374, Evalue=1e-104, Organism=Escherichia coli, GI1786332, Length=871, Percent_Identity=30.9988518943743, Blast_Score=369, Evalue=1e-103, Organism=Escherichia coli, GI1786744, Length=907, Percent_Identity=30.5402425578831, Blast_Score=365, Evalue=1e-102, Organism=Escherichia coli, GI1789533, Length=880, Percent_Identity=30.7954545454545, Blast_Score=361, Evalue=1e-100, Organism=Escherichia coli, GI1788427, Length=865, Percent_Identity=30.1734104046243, Blast_Score=358, Evalue=1e-99, Organism=Escherichia coli, GI87081778, Length=863, Percent_Identity=25.4924681344148, Blast_Score=222, Evalue=9e-59, Organism=Escherichia coli, GI1789610, Length=743, Percent_Identity=23.1493943472409, Blast_Score=115, Evalue=1e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 97184; Mature: 97184
Theoretical pI: Translated: 8.10; Mature: 8.10
Prosite motif: PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVQARVILKKNFSGRRKALTLCITLILHIDTAFGQEEPQNFEFDESLFLGTKYASGLTQL CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHH NKKNSITAGNYDAVDVLVNNKLFKRMSVQFIKDANSSEVYPCLSDELLTAAGVELGRENS CCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC TPPKEPHVTEANTPITETHAPTNQCLPLSTRVKGASFRFDQAKLRLELSIPQALLQKRPR CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEECCEEEEEEEECCHHHHHCCCC GYIERAEWQEGEKLAFINYSANAYRSDTRGQQKRTSDFGFIGLKSGINLGLWQVRQQSNV CCHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCEEEHHHCCC RYASNDSGSDTQWNSIRTYVQRPIPQLDSQLTLGETFTDSTLFGSMSFLGAKMATDQRMW EEECCCCCCCCCHHHHHHHHHCCCHHHCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCCC PVSMRGFSPEVRGVASTNARVIIRQNGREIYETNVAPGPFVINDLFSTSSQGDLNVEVIE EEECCCCCCCCCEEECCCCEEEEEECCCEEEECCCCCCCEEEEHHHCCCCCCCEEEEEEE ANGSRSTFTVPFSAVPDSMRPGVSRYNAVIGESRDFTNIDNYFTDFTYERGLTNQLTANS CCCCCEEEEEEHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCEEECCCCCCCCCCCC GVRLAKDYTALLAGGVLGTPVGALGLNATYSHAKVENDKTQDGWRMQATYSQTFNQTGTT CCEEHHHHHHHHHCCHHCCCCHHHCCCCCCCCEECCCCCCCCCEEEEEEHHHHHCCCCCE FSLAGYRYSTKGYRDLNDVFGVRSMQKNGGTWDSSTYKQRSQFTTTINQDLGNWGQLYAS EEEECEEECCCCCCCHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHEEEE ASTSDYYNDTARDTQLQLGYSNSYQQISYNLAVSRQRSVYTSTLYNWDSPDTDETATTTR CCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEE YGNTENIATFTVSIPLNIGSNNQYLSMSASRNPKSGNNYQTSLSGTAGERNSFNYALNAG CCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEECC YDDSNFGSSSNNWGANVQKQFPNATVNGSYSRGNNYTQYGAGARGAAVIHRQGVTLGPYL CCCCCCCCCCCCCCCCHHHHCCCCEECCCCCCCCCCEECCCCCCCEEEEEECCCEECCCC GETFGLIEANGAQGATVRNAQGARIDSNGFALVPALTPYNYNTIGLDTKGINRNTELKEN CCCCCEEECCCCCCCEEECCCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCC QGRVVPYAGAAVKVKFETLTGYAVLIQAEGEGLPLGADVYNSKDELVGMVGQGNQIYARI CCCEEEECCCEEEEEEEEECCEEEEEEECCCCCCCCCHHCCCCCCEEEEECCCCEEEEEE ADNKGTLDVRWGESSGDQCQLPYAFNRQDTEQDIIHITASCRR ECCCCEEEEEECCCCCCEEECCEECCCCCCCCEEEEEEEECCC >Mature Secondary Structure MVQARVILKKNFSGRRKALTLCITLILHIDTAFGQEEPQNFEFDESLFLGTKYASGLTQL CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHH NKKNSITAGNYDAVDVLVNNKLFKRMSVQFIKDANSSEVYPCLSDELLTAAGVELGRENS CCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC TPPKEPHVTEANTPITETHAPTNQCLPLSTRVKGASFRFDQAKLRLELSIPQALLQKRPR CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEECCEEEEEEEECCHHHHHCCCC GYIERAEWQEGEKLAFINYSANAYRSDTRGQQKRTSDFGFIGLKSGINLGLWQVRQQSNV CCHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCEEEHHHCCC RYASNDSGSDTQWNSIRTYVQRPIPQLDSQLTLGETFTDSTLFGSMSFLGAKMATDQRMW EEECCCCCCCCCHHHHHHHHHCCCHHHCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCCC PVSMRGFSPEVRGVASTNARVIIRQNGREIYETNVAPGPFVINDLFSTSSQGDLNVEVIE EEECCCCCCCCCEEECCCCEEEEEECCCEEEECCCCCCCEEEEHHHCCCCCCCEEEEEEE ANGSRSTFTVPFSAVPDSMRPGVSRYNAVIGESRDFTNIDNYFTDFTYERGLTNQLTANS CCCCCEEEEEEHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCEEECCCCCCCCCCCC GVRLAKDYTALLAGGVLGTPVGALGLNATYSHAKVENDKTQDGWRMQATYSQTFNQTGTT CCEEHHHHHHHHHCCHHCCCCHHHCCCCCCCCEECCCCCCCCCEEEEEEHHHHHCCCCCE FSLAGYRYSTKGYRDLNDVFGVRSMQKNGGTWDSSTYKQRSQFTTTINQDLGNWGQLYAS EEEECEEECCCCCCCHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHEEEE ASTSDYYNDTARDTQLQLGYSNSYQQISYNLAVSRQRSVYTSTLYNWDSPDTDETATTTR CCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEE YGNTENIATFTVSIPLNIGSNNQYLSMSASRNPKSGNNYQTSLSGTAGERNSFNYALNAG CCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEECC YDDSNFGSSSNNWGANVQKQFPNATVNGSYSRGNNYTQYGAGARGAAVIHRQGVTLGPYL CCCCCCCCCCCCCCCCHHHHCCCCEECCCCCCCCCCEECCCCCCCEEEEEECCCEECCCC GETFGLIEANGAQGATVRNAQGARIDSNGFALVPALTPYNYNTIGLDTKGINRNTELKEN CCCCCEEECCCCCCCEEECCCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCC QGRVVPYAGAAVKVKFETLTGYAVLIQAEGEGLPLGADVYNSKDELVGMVGQGNQIYARI CCCEEEECCCEEEEEEEEECCEEEEEEECCCCCCCCCHHCCCCCCEEEEECCCCEEEEEE ADNKGTLDVRWGESSGDQCQLPYAFNRQDTEQDIIHITASCRR ECCCCEEEEEECCCCCCEEECCEECCCCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677609 [H]