Click here to switch to the map view.

The map label for this gene is 153949179

Identifier: 153949179

GI number: 153949179

Start: 958005

End: 959609

Strand: Direct

Name: 153949179

Synonym: YpsIP31758_0796

Alternate gene names: NA

Gene position: 958005-959609 (Clockwise)

Preceding gene: 153949709

Following gene: 153948159

Centisome position: 20.28

GC content: 57.13

Gene sequence:

>1605_bases
ATGGCGACGTTAAATACCCTGATCACTGCCTGTGCCGCTGTCCCTGATTCACTGTTATTAAAGGCAGAACAACAGGTTAC
ACTTTGGGATCGCTGGTTGCAGCCGGTGACGACTGAACAGCACAGCGGAGAAGACCTCAGTTACAATGATGACTTCCAGC
AGATGCGTGAAGAGGTCAATAAGCTCTCGGGTGCTGATACCACGTTAGCCAGCGAGCTGGCAGAAAAACTGTTAACCCTG
CATGGCAAAGATGTGCGGGTGGCAACCTATTACATTTGGGCGCGTTTACACCGTGATGGCGAGGCTGGGCTGGCGGATGG
ACTGGCACTGCTGGCCGGGCTTATCAGCCGTTTTGGTGAAACCCTGCATCCGTTGCGCGCAGCCAGTCGGAAAACTGCGC
TGGAATGGCTATCGAGTTCTCGCGTGCTGGACAGTTTGTCGCTCTATCCTGAAGTGGATAATGCGGATTTTGAACGCATC
GTTGGCGCACTGGCGTTAATCGAACAGAGCCTCAGCGGCTGGGATGACGCATCCCGTCCGCAGTTTGGTGGATTGTATCT
TGCCTTGGAACATCGTCTGGCGCAGTCCGGTGGACCGAATGCGGTGGTGCCACAAAACAGCAGCGGGTCATCATCGGCAG
GGAGTCAGGGCCAGACGGCTATGGTTTCACCGGAGTTGCGGCCAGTCCAGTCGGGGCGTGACCTGCTCGACCAGGCTAAA
ACGTTAGCAAAATACCTGCGGAACCAGCCGCAGGGATGGCTCTCCGGGCATCATCTTATCAAGAGCGTGCGCTGGGATAC
GGTACACCAGTCACCGCCGTTGGATGTGAGTGGACGAACCCGACTGGTACCGCCGCGCCCGGAATATCGCGTGCTGCTTA
AGCGTCTTTATCTGCAACAAAACTGGCTGGAGTTGTTGGAACAGGCGGAATCGATATTTGCCGAAGGGGTCAACCATTTC
TGGCTCGATGTGCAGTGGTATCTGCATCAGGCACTCAGTAAAGCGGGAGCCCCATTCGATGGCTGGGCAGCTTGTATCAC
CCAGGATTTACGTCTGTTACTGACCCGGCTGCCCGGTCTGGAGGGGCTATGCTGGAGTGACGGCACGCCGTTTGCCGATG
AGGTGACGCTGGGGTGGATAAACCAGCAGGTGCTGGAGTCGGTGTCGGGCTGGGGCAGCGAGCCTGCCGCCGTGATGGCA
TCGGGCGAAGATGACATTCTGTTGCTGGAGCCAGAAGCTCTGGCTCAGGCGGACAGTGAAGGGATTGAAGCCGCACTTAA
CTGGTTGCAATCCCGTCCGGGTATTACCACTGCCCGCCATCAGTGGCTGCTGCGTTTGGTGATGGCCCGCGTGGCGGAGC
AGTACGGCAAGAACGATATGGCACTGCATCTGCTTAGTGAACTTGATAGCCGCGGTGCATTGCTAACCTTGCCGCAGTGG
GAGCCGGGGCTGGCGTTTGAAGTCAAAGCCCGAAGTCTGAAGCTGCTGCGGATGAAAGCACAACGCAGCGACAGTGAAAA
AACCCGCCTGCATATCGAAATGGAAAGCTTGCTCAGTGGGCTTATGGCCCTCGACCCGGCCCGTGCGGCCGTATTATGCG
GATAA

Upstream 100 bases:

>100_bases
AGAGCGCCCCTTCAGCGGCATCTGATCGGACCGATGATGAGGATATGGCAGAGGATTAATCTCTTTTGTCACCCCCTGAT
ATTGACCAACAGGAGCCATG

Downstream 100 bases:

>100_bases
CCGAAAAGGAATAGACAATGGCAAAAGGTTATTACCTTGGTGTTGGGGATCAAACAACCTGTGGTGGCGTGATCATCGAA
GGTGATGCCACTCATATCCT

Product: ImpA domain-containing protein

Products: NA

Alternate protein names: ImpA Domain-Containing Protein; Type VI Secretion System Protein VasJ; ImpA N-Terminal; Conserved Protein; ImpA-Like Protein

Number of amino acids: Translated: 534; Mature: 533

Protein sequence:

>534_residues
MATLNTLITACAAVPDSLLLKAEQQVTLWDRWLQPVTTEQHSGEDLSYNDDFQQMREEVNKLSGADTTLASELAEKLLTL
HGKDVRVATYYIWARLHRDGEAGLADGLALLAGLISRFGETLHPLRAASRKTALEWLSSSRVLDSLSLYPEVDNADFERI
VGALALIEQSLSGWDDASRPQFGGLYLALEHRLAQSGGPNAVVPQNSSGSSSAGSQGQTAMVSPELRPVQSGRDLLDQAK
TLAKYLRNQPQGWLSGHHLIKSVRWDTVHQSPPLDVSGRTRLVPPRPEYRVLLKRLYLQQNWLELLEQAESIFAEGVNHF
WLDVQWYLHQALSKAGAPFDGWAACITQDLRLLLTRLPGLEGLCWSDGTPFADEVTLGWINQQVLESVSGWGSEPAAVMA
SGEDDILLLEPEALAQADSEGIEAALNWLQSRPGITTARHQWLLRLVMARVAEQYGKNDMALHLLSELDSRGALLTLPQW
EPGLAFEVKARSLKLLRMKAQRSDSEKTRLHIEMESLLSGLMALDPARAAVLCG

Sequences:

>Translated_534_residues
MATLNTLITACAAVPDSLLLKAEQQVTLWDRWLQPVTTEQHSGEDLSYNDDFQQMREEVNKLSGADTTLASELAEKLLTL
HGKDVRVATYYIWARLHRDGEAGLADGLALLAGLISRFGETLHPLRAASRKTALEWLSSSRVLDSLSLYPEVDNADFERI
VGALALIEQSLSGWDDASRPQFGGLYLALEHRLAQSGGPNAVVPQNSSGSSSAGSQGQTAMVSPELRPVQSGRDLLDQAK
TLAKYLRNQPQGWLSGHHLIKSVRWDTVHQSPPLDVSGRTRLVPPRPEYRVLLKRLYLQQNWLELLEQAESIFAEGVNHF
WLDVQWYLHQALSKAGAPFDGWAACITQDLRLLLTRLPGLEGLCWSDGTPFADEVTLGWINQQVLESVSGWGSEPAAVMA
SGEDDILLLEPEALAQADSEGIEAALNWLQSRPGITTARHQWLLRLVMARVAEQYGKNDMALHLLSELDSRGALLTLPQW
EPGLAFEVKARSLKLLRMKAQRSDSEKTRLHIEMESLLSGLMALDPARAAVLCG
>Mature_533_residues
ATLNTLITACAAVPDSLLLKAEQQVTLWDRWLQPVTTEQHSGEDLSYNDDFQQMREEVNKLSGADTTLASELAEKLLTLH
GKDVRVATYYIWARLHRDGEAGLADGLALLAGLISRFGETLHPLRAASRKTALEWLSSSRVLDSLSLYPEVDNADFERIV
GALALIEQSLSGWDDASRPQFGGLYLALEHRLAQSGGPNAVVPQNSSGSSSAGSQGQTAMVSPELRPVQSGRDLLDQAKT
LAKYLRNQPQGWLSGHHLIKSVRWDTVHQSPPLDVSGRTRLVPPRPEYRVLLKRLYLQQNWLELLEQAESIFAEGVNHFW
LDVQWYLHQALSKAGAPFDGWAACITQDLRLLLTRLPGLEGLCWSDGTPFADEVTLGWINQQVLESVSGWGSEPAAVMAS
GEDDILLLEPEALAQADSEGIEAALNWLQSRPGITTARHQWLLRLVMARVAEQYGKNDMALHLLSELDSRGALLTLPQWE
PGLAFEVKARSLKLLRMKAQRSDSEKTRLHIEMESLLSGLMALDPARAAVLCG

Specific function: Unknown

COG id: COG3515

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58978; Mature: 58846

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLNTLITACAAVPDSLLLKAEQQVTLWDRWLQPVTTEQHSGEDLSYNDDFQQMREEVN
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
KLSGADTTLASELAEKLLTLHGKDVRVATYYIWARLHRDGEAGLADGLALLAGLISRFGE
HHCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
TLHPLRAASRKTALEWLSSSRVLDSLSLYPEVDNADFERIVGALALIEQSLSGWDDASRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
QFGGLYLALEHRLAQSGGPNAVVPQNSSGSSSAGSQGQTAMVSPELRPVQSGRDLLDQAK
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
TLAKYLRNQPQGWLSGHHLIKSVRWDTVHQSPPLDVSGRTRLVPPRPEYRVLLKRLYLQQ
HHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHH
NWLELLEQAESIFAEGVNHFWLDVQWYLHQALSKAGAPFDGWAACITQDLRLLLTRLPGL
HHHHHHHHHHHHHHHCCHHHEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
EGLCWSDGTPFADEVTLGWINQQVLESVSGWGSEPAAVMASGEDDILLLEPEALAQADSE
CCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEECCHHHHHCCHH
GIEAALNWLQSRPGITTARHQWLLRLVMARVAEQYGKNDMALHLLSELDSRGALLTLPQW
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEECCCC
EPGLAFEVKARSLKLLRMKAQRSDSEKTRLHIEMESLLSGLMALDPARAAVLCG
CCCCEEEEHHHHHHHHHHHHHCCCCCHHEEEEEHHHHHHHHHHCCCHHHHHCCC
>Mature Secondary Structure 
ATLNTLITACAAVPDSLLLKAEQQVTLWDRWLQPVTTEQHSGEDLSYNDDFQQMREEVN
CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
KLSGADTTLASELAEKLLTLHGKDVRVATYYIWARLHRDGEAGLADGLALLAGLISRFGE
HHCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
TLHPLRAASRKTALEWLSSSRVLDSLSLYPEVDNADFERIVGALALIEQSLSGWDDASRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
QFGGLYLALEHRLAQSGGPNAVVPQNSSGSSSAGSQGQTAMVSPELRPVQSGRDLLDQAK
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
TLAKYLRNQPQGWLSGHHLIKSVRWDTVHQSPPLDVSGRTRLVPPRPEYRVLLKRLYLQQ
HHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHH
NWLELLEQAESIFAEGVNHFWLDVQWYLHQALSKAGAPFDGWAACITQDLRLLLTRLPGL
HHHHHHHHHHHHHHHCCHHHEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
EGLCWSDGTPFADEVTLGWINQQVLESVSGWGSEPAAVMASGEDDILLLEPEALAQADSE
CCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEECCHHHHHCCHH
GIEAALNWLQSRPGITTARHQWLLRLVMARVAEQYGKNDMALHLLSELDSRGALLTLPQW
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEECCCC
EPGLAFEVKARSLKLLRMKAQRSDSEKTRLHIEMESLLSGLMALDPARAAVLCG
CCCCEEEEHHHHHHHHHHHHHCCCCCHHEEEEEHHHHHHHHHHCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA