| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is yjjK [H]
Identifier: 153949023
GI number: 153949023
Start: 3935802
End: 3937469
Strand: Direct
Name: yjjK [H]
Synonym: YpsIP31758_3489
Alternate gene names: 153949023
Gene position: 3935802-3937469 (Clockwise)
Preceding gene: 153949584
Following gene: 153948803
Centisome position: 83.33
GC content: 52.1
Gene sequence:
>1668_bases GTGGCTCAATACGTCTATACCATGCACCGCGTCGGTAAAGTTGTTCCACCGAAACGGCATATCCTGAAAAACATCTCCCT GAGCTTTTTCCCAGGGGCAAAAATTGGTGTACTGGGCCTGAACGGCTCCGGTAAATCTACCCTGTTGCGCATCATGGCTG GCCTTGATACCGAGATTGAGGGCGAAGCTCGTCCACAACCTGGGATCAAAATTGGCTATCTGCCGCAGGAACCTAAACTG AATCTTGAACAAACGGTCCGTGAATCGGTTGAAGAAGCCGTGGGTGAAGTCAAACGTGCGCTGACCCGTCTGGATGAAGT TTATGCGCTATATGCCGATCCTGATGCGGATTTCGATAAGCTGGCAAAAGAGCAAGGCGAGCTGGAAGCAATTATCCAAT CCCATGACGGCCATAATCTGGATAACCAACTAGAGCGCGCCGCCGATGCCCTGCGTCTGCCACCGTGGGATGCTAAAATC GCCAATTTGTCCGGTGGTGAGCGTCGCCGTGTCGCGATTTGCCGCCTACTGCTGGAAAAACCAGACATGCTGCTGCTGGA CGAACCAACCAACCACTTGGATGCAGAATCTGTGGCCTGGCTGGAGCGCTTCCTGCATGACTACGAAGGCACTGTAGTGG CGATCACCCATGACCGTTACTTCCTTGATAACGTTGCTGGCTGGATTCTGGAACTGGATCGTGGTGAAGGTATTCCATGG GAAGGCAACTACTCCTCTTGGCTGGAACAAAAAAATGCCCGTCTGGCGCAAGAAGCCTCTTCTGAAGCCGCACGTCGCAA ATCCATTGAGAAAGAACTGGAGTGGGTTCGTCAGAATCCTAAAGGCCGTCAGGCGAAGGGTAAAGCTCGTTTGGCCCGCT TTGAAGAACTTAACAGCGTTGAATATCAAAAACGTAACGAAACCAGCGAGCTGTTCATTCCACCGGGTCCACGCTTAGGC GACAAAGTGCTGGAAGTGGAGCATCTGAGCAAATCTTATGGTGACCGCCTGCTGATTGACGATCTGACTTTTGCTCTGCC GAAAGGCGCAATCGTTGGGATCATCGGGCCGAACGGCGCCGGTAAATCAACCCTGTTCCGCATGCTATCCGGCCAGGAAC AACCCGATTCAGGCACTATCTCGCTTGGTGATACGGTGCAACTGGCGTCGGTTGATCAGTTCCGTGACAACATGGATGAC AGCAAAACCGTTTGGGAAGAAGTTTCCGGTGGTCAGGACATCATGAAAATCGGTAACTTTGAGCTGCCAAGCCGCGCGTA TGTTGGCCGTTTCAACTTCAAAGGGGTCGATCAGGGTAAGCGCATCGGCGAGTTATCCGGTGGTGAGCGCGGCCGAATTC ATTTGGCTAAGCTGCTACAGGTTGGCGGTAACATGTTGCTGCTCGATGAACCTACCAACGACCTGGATATCGAAACCCTG CGAGCGCTGGAAAACGCCTTGCTGGAGTTCCCAGGTTGCGCCATGGTTATTTCCCATGACCGTTGGTTCCTTGACCGGAT TGCCACCCACATCATCGATTATCAAGATGAGGGTAAGGTAGAATTCTTCGAGGGTAACTTTACTGAATACGAAGAGTGGA AGAAGCGCACTCTGGGGGCTGAGGCACTTGAGCCACACCGTATTAAATATAAGAAAATGACCAAATAG
Upstream 100 bases:
>100_bases GCAGCTTAGCTGCCAGGATGAAGTGGATCACTGGGATCCCTTATCAAAACGGGCTACACTTGTGCCCTATAAAAAACTGA TATAGAGAGGCAGACTCAAC
Downstream 100 bases:
>100_bases TTTTTGAGATACCCTAAATAAATCGAGTTGCAGGAAGGCGGCAACTGAGTACATTCCCAGCCATTTACATCAGTAAGTGG CTGGCGGGTAGAAGTCTGAC
Product: ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 555; Mature: 554
Protein sequence:
>555_residues MAQYVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGSGKSTLLRIMAGLDTEIEGEARPQPGIKIGYLPQEPKL NLEQTVRESVEEAVGEVKRALTRLDEVYALYADPDADFDKLAKEQGELEAIIQSHDGHNLDNQLERAADALRLPPWDAKI ANLSGGERRRVAICRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDYEGTVVAITHDRYFLDNVAGWILELDRGEGIPW EGNYSSWLEQKNARLAQEASSEAARRKSIEKELEWVRQNPKGRQAKGKARLARFEELNSVEYQKRNETSELFIPPGPRLG DKVLEVEHLSKSYGDRLLIDDLTFALPKGAIVGIIGPNGAGKSTLFRMLSGQEQPDSGTISLGDTVQLASVDQFRDNMDD SKTVWEEVSGGQDIMKIGNFELPSRAYVGRFNFKGVDQGKRIGELSGGERGRIHLAKLLQVGGNMLLLDEPTNDLDIETL RALENALLEFPGCAMVISHDRWFLDRIATHIIDYQDEGKVEFFEGNFTEYEEWKKRTLGAEALEPHRIKYKKMTK
Sequences:
>Translated_555_residues MAQYVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGSGKSTLLRIMAGLDTEIEGEARPQPGIKIGYLPQEPKL NLEQTVRESVEEAVGEVKRALTRLDEVYALYADPDADFDKLAKEQGELEAIIQSHDGHNLDNQLERAADALRLPPWDAKI ANLSGGERRRVAICRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDYEGTVVAITHDRYFLDNVAGWILELDRGEGIPW EGNYSSWLEQKNARLAQEASSEAARRKSIEKELEWVRQNPKGRQAKGKARLARFEELNSVEYQKRNETSELFIPPGPRLG DKVLEVEHLSKSYGDRLLIDDLTFALPKGAIVGIIGPNGAGKSTLFRMLSGQEQPDSGTISLGDTVQLASVDQFRDNMDD SKTVWEEVSGGQDIMKIGNFELPSRAYVGRFNFKGVDQGKRIGELSGGERGRIHLAKLLQVGGNMLLLDEPTNDLDIETL RALENALLEFPGCAMVISHDRWFLDRIATHIIDYQDEGKVEFFEGNFTEYEEWKKRTLGAEALEPHRIKYKKMTK >Mature_554_residues AQYVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGSGKSTLLRIMAGLDTEIEGEARPQPGIKIGYLPQEPKLN LEQTVRESVEEAVGEVKRALTRLDEVYALYADPDADFDKLAKEQGELEAIIQSHDGHNLDNQLERAADALRLPPWDAKIA NLSGGERRRVAICRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDYEGTVVAITHDRYFLDNVAGWILELDRGEGIPWE GNYSSWLEQKNARLAQEASSEAARRKSIEKELEWVRQNPKGRQAKGKARLARFEELNSVEYQKRNETSELFIPPGPRLGD KVLEVEHLSKSYGDRLLIDDLTFALPKGAIVGIIGPNGAGKSTLFRMLSGQEQPDSGTISLGDTVQLASVDQFRDNMDDS KTVWEEVSGGQDIMKIGNFELPSRAYVGRFNFKGVDQGKRIGELSGGERGRIHLAKLLQVGGNMLLLDEPTNDLDIETLR ALENALLEFPGCAMVISHDRWFLDRIATHIIDYQDEGKVEFFEGNFTEYEEWKKRTLGAEALEPHRIKYKKMTK
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI10947137, Length=552, Percent_Identity=29.5289855072464, Blast_Score=177, Evalue=3e-44, Organism=Homo sapiens, GI27881506, Length=552, Percent_Identity=29.5289855072464, Blast_Score=177, Evalue=3e-44, Organism=Homo sapiens, GI148612853, Length=522, Percent_Identity=26.8199233716475, Blast_Score=166, Evalue=6e-41, Organism=Homo sapiens, GI69354671, Length=547, Percent_Identity=28.5191956124314, Blast_Score=154, Evalue=3e-37, Organism=Homo sapiens, GI10947135, Length=547, Percent_Identity=28.5191956124314, Blast_Score=153, Evalue=3e-37, Organism=Homo sapiens, GI31657092, Length=202, Percent_Identity=28.7128712871287, Blast_Score=69, Evalue=9e-12, Organism=Escherichia coli, GI2367384, Length=555, Percent_Identity=90.0900900900901, Blast_Score=1034, Evalue=0.0, Organism=Escherichia coli, GI1787182, Length=514, Percent_Identity=33.4630350194552, Blast_Score=270, Evalue=2e-73, Organism=Escherichia coli, GI1789751, Length=530, Percent_Identity=32.4528301886792, Blast_Score=243, Evalue=3e-65, Organism=Escherichia coli, GI1787041, Length=517, Percent_Identity=31.9148936170213, Blast_Score=229, Evalue=3e-61, Organism=Escherichia coli, GI87081782, Length=544, Percent_Identity=25.1838235294118, Blast_Score=110, Evalue=3e-25, Organism=Escherichia coli, GI48994943, Length=504, Percent_Identity=24.2063492063492, Blast_Score=89, Evalue=8e-19, Organism=Escherichia coli, GI1790739, Length=173, Percent_Identity=36.4161849710983, Blast_Score=87, Evalue=3e-18, Organism=Escherichia coli, GI87081791, Length=198, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI87081709, Length=193, Percent_Identity=26.9430051813472, Blast_Score=83, Evalue=5e-17, Organism=Escherichia coli, GI1788225, Length=221, Percent_Identity=27.6018099547511, Blast_Score=80, Evalue=4e-16, Organism=Escherichia coli, GI1789672, Length=222, Percent_Identity=31.5315315315315, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI1790190, Length=520, Percent_Identity=20.5769230769231, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1786703, Length=226, Percent_Identity=30.9734513274336, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1786975, Length=349, Percent_Identity=25.5014326647564, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1786563, Length=194, Percent_Identity=27.319587628866, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1787164, Length=183, Percent_Identity=28.4153005464481, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1787089, Length=239, Percent_Identity=28.4518828451883, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI1788506, Length=245, Percent_Identity=26.1224489795918, Blast_Score=66, Evalue=8e-12, Organism=Escherichia coli, GI1788450, Length=214, Percent_Identity=27.1028037383178, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI87081834, Length=214, Percent_Identity=28.0373831775701, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1788644, Length=233, Percent_Identity=28.755364806867, Blast_Score=63, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17555318, Length=546, Percent_Identity=27.1062271062271, Blast_Score=179, Evalue=5e-45, Organism=Caenorhabditis elegans, GI17559834, Length=538, Percent_Identity=26.3940520446097, Blast_Score=177, Evalue=1e-44, Organism=Caenorhabditis elegans, GI17553372, Length=529, Percent_Identity=30.2457466918715, Blast_Score=174, Evalue=8e-44, Organism=Caenorhabditis elegans, GI17565938, Length=211, Percent_Identity=28.9099526066351, Blast_Score=69, Evalue=8e-12, Organism=Caenorhabditis elegans, GI71988343, Length=259, Percent_Identity=24.7104247104247, Blast_Score=66, Evalue=5e-11, Organism=Caenorhabditis elegans, GI25146777, Length=169, Percent_Identity=29.585798816568, Blast_Score=65, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6321121, Length=541, Percent_Identity=27.3567467652495, Blast_Score=184, Evalue=2e-47, Organism=Saccharomyces cerevisiae, GI6320874, Length=525, Percent_Identity=28.3809523809524, Blast_Score=181, Evalue=2e-46, Organism=Saccharomyces cerevisiae, GI6323278, Length=237, Percent_Identity=30.8016877637131, Blast_Score=108, Evalue=2e-24, Organism=Saccharomyces cerevisiae, GI6324314, Length=382, Percent_Identity=26.4397905759162, Blast_Score=106, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6325030, Length=389, Percent_Identity=25.9640102827763, Blast_Score=100, Evalue=5e-22, Organism=Saccharomyces cerevisiae, GI6320266, Length=382, Percent_Identity=23.5602094240838, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24666836, Length=527, Percent_Identity=30.1707779886148, Blast_Score=197, Evalue=2e-50, Organism=Drosophila melanogaster, GI24642252, Length=542, Percent_Identity=28.2287822878229, Blast_Score=186, Evalue=3e-47, Organism=Drosophila melanogaster, GI18859989, Length=542, Percent_Identity=28.2287822878229, Blast_Score=186, Evalue=3e-47, Organism=Drosophila melanogaster, GI24641342, Length=540, Percent_Identity=28.7037037037037, Blast_Score=180, Evalue=3e-45, Organism=Drosophila melanogaster, GI24666092, Length=174, Percent_Identity=31.6091954022989, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI28574259, Length=211, Percent_Identity=27.4881516587678, Blast_Score=67, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022374 - InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 62440; Mature: 62308
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQYVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGSGKSTLLRIMAGLDTEIE CCCHHHHHHHHCCCCCCHHHHHHHCCEEECCCCEEEEEEECCCCHHHHHHHHHCCCCCCC GEARPQPGIKIGYLPQEPKLNLEQTVRESVEEAVGEVKRALTRLDEVYALYADPDADFDK CCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHH LAKEQGELEAIIQSHDGHNLDNQLERAADALRLPPWDAKIANLSGGERRRVAICRLLLEK HHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHCC PDMLLLDEPTNHLDAESVAWLERFLHDYEGTVVAITHDRYFLDNVAGWILELDRGEGIPW CCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHEEEEECCCCCCC EGNYSSWLEQKNARLAQEASSEAARRKSIEKELEWVRQNPKGRQAKGKARLARFEELNSV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCH EYQKRNETSELFIPPGPRLGDKVLEVEHLSKSYGDRLLIDDLTFALPKGAIVGIIGPNGA HHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCEEEEHHHHHHCCCCCEEEEECCCCC GKSTLFRMLSGQEQPDSGTISLGDTVQLASVDQFRDNMDDSKTVWEEVSGGQDIMKIGNF CHHHHHHHHCCCCCCCCCEEEECCEEEECCHHHHHHCCCHHHHHHHHHCCCHHHHHCCCC ELPSRAYVGRFNFKGVDQGKRIGELSGGERGRIHLAKLLQVGGNMLLLDEPTNDLDIETL CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH RALENALLEFPGCAMVISHDRWFLDRIATHIIDYQDEGKVEFFEGNFTEYEEWKKRTLGA HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCC EALEPHRIKYKKMTK CCCCCCCCCHHCCCC >Mature Secondary Structure AQYVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGSGKSTLLRIMAGLDTEIE CCHHHHHHHHCCCCCCHHHHHHHCCEEECCCCEEEEEEECCCCHHHHHHHHHCCCCCCC GEARPQPGIKIGYLPQEPKLNLEQTVRESVEEAVGEVKRALTRLDEVYALYADPDADFDK CCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHH LAKEQGELEAIIQSHDGHNLDNQLERAADALRLPPWDAKIANLSGGERRRVAICRLLLEK HHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHCC PDMLLLDEPTNHLDAESVAWLERFLHDYEGTVVAITHDRYFLDNVAGWILELDRGEGIPW CCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHEEEEECCCCCCC EGNYSSWLEQKNARLAQEASSEAARRKSIEKELEWVRQNPKGRQAKGKARLARFEELNSV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCH EYQKRNETSELFIPPGPRLGDKVLEVEHLSKSYGDRLLIDDLTFALPKGAIVGIIGPNGA HHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCEEEEHHHHHHCCCCCEEEEECCCCC GKSTLFRMLSGQEQPDSGTISLGDTVQLASVDQFRDNMDDSKTVWEEVSGGQDIMKIGNF CHHHHHHHHCCCCCCCCCEEEECCEEEECCHHHHHHCCCHHHHHHHHHCCCHHHHHCCCC ELPSRAYVGRFNFKGVDQGKRIGELSGGERGRIHLAKLLQVGGNMLLLDEPTNDLDIETL CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH RALENALLEFPGCAMVISHDRWFLDRIATHIIDYQDEGKVEFFEGNFTEYEEWKKRTLGA HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCC EALEPHRIKYKKMTK CCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]