Click here to switch to the map view.

The map label for this gene is smp [H]

Identifier: 153948803

GI number: 153948803

Start: 3943031

End: 3943732

Strand: Direct

Name: smp [H]

Synonym: YpsIP31758_3494

Alternate gene names: 153948803

Gene position: 3943031-3943732 (Clockwise)

Preceding gene: 153949023

Following gene: 153946974

Centisome position: 83.48

GC content: 50.28

Gene sequence:

>702_bases
ATGGCACGGGCTAAATTAAAATTTCGACTACACCGAACAGCAATTGTACTGATCTGTTTGGCATTATTGGTCTTACTGAT
GCAAGGCGCATCCTATTTCAGCCTGAGCCACCAGTTAGCACGTTCAGAGCAGGTCGAAGAGCTGGCACAAACACTCGCCA
AACAAGTTGCTTTTAACTTGTCGCCCATTATGGATAGCGGTGACGACAATATTGATAGCCAGAAAGTCGATGCCATTCTT
CAACAACTGACGCAATCCAGCCGTATTTTAGATGCCAGCGTCTATCAGATTGACGGGACGTTGGTTGCCAGCGCCGGAGA
AAATGTGAAGGTACGCGACCGGCTGGCACTGGATGGTAAACGCCCTGGCAGTTATTTCAACCACCAAATAGTTGAAATGA
TCGCGGGTAACAGTGGGCCAAGTGGTTTTCTGCGCATGACACTGGATACCCACGTGTTGGCGACGGAATCCAAGCAAGTG
GATAACACCACTAACTTACTGCGTCTGATGATTCTGGTGGCTCTGGCCGTGGGGATTATTCTGGCCCGAACCCTGTTACA
AGGCCGCCGTAGCCGTTGGCAGCAATCCCCTTATCTGCTGACGGCCAATATACCGGTTAAAGAAGAAGATGAAAGCGAAG
ATGACACGCCAGAAGCCCTCGTCGGTCAGGCGGAAACCGACCATAAGCCTGCCGATAAATAG

Upstream 100 bases:

>100_bases
AAGAATTGGCGCTGCAGTCAGTCAATGAAGGGTGAATCAGAACCGCTGCGTCACGCAGCAACATCAAGTATGCAGGGTAT
CATTCTCGTAAGGAACCGGT

Downstream 100 bases:

>100_bases
CCTCTCGGGGACACGTTAGTGATTCAGAGAGGAATAAATCAATTCAGCGGCAGAGCTCTCTACCGCTGAAGAAAGAAAAA
ACCGCTGGAAAGGGAGAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MARAKLKFRLHRTAIVLICLALLVLLMQGASYFSLSHQLARSEQVEELAQTLAKQVAFNLSPIMDSGDDNIDSQKVDAIL
QQLTQSSRILDASVYQIDGTLVASAGENVKVRDRLALDGKRPGSYFNHQIVEMIAGNSGPSGFLRMTLDTHVLATESKQV
DNTTNLLRLMILVALAVGIILARTLLQGRRSRWQQSPYLLTANIPVKEEDESEDDTPEALVGQAETDHKPADK

Sequences:

>Translated_233_residues
MARAKLKFRLHRTAIVLICLALLVLLMQGASYFSLSHQLARSEQVEELAQTLAKQVAFNLSPIMDSGDDNIDSQKVDAIL
QQLTQSSRILDASVYQIDGTLVASAGENVKVRDRLALDGKRPGSYFNHQIVEMIAGNSGPSGFLRMTLDTHVLATESKQV
DNTTNLLRLMILVALAVGIILARTLLQGRRSRWQQSPYLLTANIPVKEEDESEDDTPEALVGQAETDHKPADK
>Mature_232_residues
ARAKLKFRLHRTAIVLICLALLVLLMQGASYFSLSHQLARSEQVEELAQTLAKQVAFNLSPIMDSGDDNIDSQKVDAILQ
QLTQSSRILDASVYQIDGTLVASAGENVKVRDRLALDGKRPGSYFNHQIVEMIAGNSGPSGFLRMTLDTHVLATESKQVD
NTTNLLRLMILVALAVGIILARTLLQGRRSRWQQSPYLLTANIPVKEEDESEDDTPEALVGQAETDHKPADK

Specific function: Unknown

COG id: COG3726

COG function: function code R; Uncharacterized membrane protein affecting hemolysin expression

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smp family [H]

Homologues:

Organism=Escherichia coli, GI1790847, Length=206, Percent_Identity=66.0194174757282, Blast_Score=269, Evalue=1e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019305 [H]

Pfam domain/function: PF10144 SMP_2 [H]

EC number: NA

Molecular weight: Translated: 25664; Mature: 25533

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARAKLKFRLHRTAIVLICLALLVLLMQGASYFSLSHQLARSEQVEELAQTLAKQVAFNL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SPIMDSGDDNIDSQKVDAILQQLTQSSRILDASVYQIDGTLVASAGENVKVRDRLALDGK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCEEEECCCCCCEEHHHHCCCCC
RPGSYFNHQIVEMIAGNSGPSGFLRMTLDTHVLATESKQVDNTTNLLRLMILVALAVGII
CCCCHHHHHHHHHHHCCCCCCCEEEEEECHHEEECCCHHCCCHHHHHHHHHHHHHHHHHH
LARTLLQGRRSRWQQSPYLLTANIPVKEEDESEDDTPEALVGQAETDHKPADK
HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
ARAKLKFRLHRTAIVLICLALLVLLMQGASYFSLSHQLARSEQVEELAQTLAKQVAFNL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SPIMDSGDDNIDSQKVDAILQQLTQSSRILDASVYQIDGTLVASAGENVKVRDRLALDGK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCEEEECCCCCCEEHHHHCCCCC
RPGSYFNHQIVEMIAGNSGPSGFLRMTLDTHVLATESKQVDNTTNLLRLMILVALAVGII
CCCCHHHHHHHHHHHCCCCCCCEEEEEECHHEEECCCHHCCCHHHHHHHHHHHHHHHHHH
LARTLLQGRRSRWQQSPYLLTANIPVKEEDESEDDTPEALVGQAETDHKPADK
HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]