Click here to switch to the map view.

The map label for this gene is ssaU [H]

Identifier: 153948750

GI number: 153948750

Start: 4296675

End: 4297745

Strand: Reverse

Name: ssaU [H]

Synonym: YpsIP31758_3811

Alternate gene names: 153948750

Gene position: 4297745-4296675 (Counterclockwise)

Preceding gene: 153948893

Following gene: 153948170

Centisome position: 90.99

GC content: 48.55

Gene sequence:

>1071_bases
ATGATGTCCACTGAAAAGAATGAAAAACCCACGCCCAAGCGCCTTAAGGAAGCCAAAGAAAAAGGGCAGGTAGTCAAAAG
TGTTGAGATAACCTCCGGCGTACAGTTGGTGGCGCTGGTTATCTACTTTTTACTGACAGGATATAGCTTGGTCGAGCAGG
CTAAAGCCCTTATCCGCAGTTCAATCATACAATTACAGCAACCACTTACTCTGGCTTTAGCCCGTATCGGTGCCGAGTGC
ATGACGGTATTGATGCATATCGTGGTGGTCTTGGGCGGGGCGCTGATCGTGGTCACCATTATTGCCGGTATTGCTCAGGT
TGGGCCGTTGTTGGCGACCAAAGCGGTGTCGTTTAAAGGTGAGCGAATTAACCCCATTCAAAATGCTAAACAACTTTTCT
CATTGCGCAGCGTGTTTGAGCTGATGAAATCATTATTGAAAGTGGGGGTGCTAACGCTGATTTTTGGTTACTTATTGATG
CAGTATGCGCCCTCTTTTGGTTATTTGACCCACTGTGGCAGTCGCTGTGCTCTCCCGGTCTTTTCGACACTAATGGGGTG
GTTATTAGGCTCACTGATTGCCTGCTATCTGGTTTTTTCATTGATGGATTATACTTTTCAGCGCTATACCATCATGAAAC
AACTGAAAATGTCCCATGATGAGGTCAAGCGGGAGCATAAAGACAGTAATGGGGATCCGCACATTAAGCAGAAGCGGCGG
CAGCTACAGCATGAAGTACAAAGTGGTAGTTTTGCCACTAACGTGCGGCGTTCCACTGCGGTAGTCCGTAACCCGACACA
TTTTGCCGTTTGTCTGGTTTATCACCCAGAAGAGACGCCGCTACCGATAGTGATTGAAAAAGGTCATGATGAGCAGGCTG
CATTGATTGTGAGCCTCGCAGAGCAGAGCGGTATCCCTGTGGTAGAAAACATTGCGCTGGCGCGCGCATTACACCGTGAT
GTTGCTTGTGGTGACACCATCCCAGAACAATTCTTCGAGCCAGTTGCTGCGCTCTTACGTATGGCACTGGAGTTGGATTA
TCAGCCATCAAGTGATGATCCACCGCGCTAG

Upstream 100 bases:

>100_bases
TTACTGATCAGCCTGCCTTATGGCCTGCATCACTACCTGTCCCGTATGAGCGATACTGAACAGAAGATTGGTACGTTGAT
CCCGTTGATCAAAGGGGGGA

Downstream 100 bases:

>100_bases
CTGACCCCCGATATACCCCGTGATTCAATGATATTGGATATTTCAACTCAGTATTTGAGTAATATCTAAATTATGTAACA
TCGATCTTTATTATGTGAAT

Product: secretion system apparatus protein SsaU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MMSTEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSIIQLQQPLTLALARIGAEC
MTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKGERINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLM
QYAPSFGYLTHCGSRCALPVFSTLMGWLLGSLIACYLVFSLMDYTFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQKRR
QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLVYHPEETPLPIVIEKGHDEQAALIVSLAEQSGIPVVENIALARALHRD
VACGDTIPEQFFEPVAALLRMALELDYQPSSDDPPR

Sequences:

>Translated_356_residues
MMSTEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSIIQLQQPLTLALARIGAEC
MTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKGERINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLM
QYAPSFGYLTHCGSRCALPVFSTLMGWLLGSLIACYLVFSLMDYTFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQKRR
QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLVYHPEETPLPIVIEKGHDEQAALIVSLAEQSGIPVVENIALARALHRD
VACGDTIPEQFFEPVAALLRMALELDYQPSSDDPPR
>Mature_356_residues
MMSTEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSIIQLQQPLTLALARIGAEC
MTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKGERINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLM
QYAPSFGYLTHCGSRCALPVFSTLMGWLLGSLIACYLVFSLMDYTFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQKRR
QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLVYHPEETPLPIVIEKGHDEQAALIVSLAEQSGIPVVENIALARALHRD
VACGDTIPEQFFEPVAALLRMALELDYQPSSDDPPR

Specific function: Part of a type III secretion system [H]

COG id: COG4792

COG function: function code U; Type III secretory pathway, component EscU

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the type III secretion exporter family [H]

Homologues:

Organism=Escherichia coli, GI1788188, Length=351, Percent_Identity=28.7749287749288, Blast_Score=143, Evalue=2e-35,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006135
- InterPro:   IPR006307 [H]

Pfam domain/function: PF01312 Bac_export_2 [H]

EC number: NA

Molecular weight: Translated: 39452; Mature: 39452

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSTEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ERINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHH
FSTLMGWLLGSLIACYLVFSLMDYTFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQKRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHH
QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLVYHPEETPLPIVIEKGHDEQAALIVSLA
HHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHH
EQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDYQPSSDDPPR
HHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MMSTEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ERINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHH
FSTLMGWLLGSLIACYLVFSLMDYTFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQKRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHH
QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLVYHPEETPLPIVIEKGHDEQAALIVSLA
HHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHH
EQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDYQPSSDDPPR
HHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140973; 11677609 [H]