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The map label for this gene is ycfS [H]

Identifier: 153948284

GI number: 153948284

Start: 2021272

End: 2022336

Strand: Direct

Name: ycfS [H]

Synonym: YpsIP31758_1747

Alternate gene names: 153948284

Gene position: 2021272-2022336 (Clockwise)

Preceding gene: 153950798

Following gene: 153950122

Centisome position: 42.79

GC content: 49.95

Gene sequence:

>1065_bases
ATGAAACGTGCATTAACTTTGATTGGTATGTTATTTGCTACTTGTCTGGCAGGTAGTCTCACTGCTGCCAATGCGAACGA
GTACCCACTGCCGCCCGCTAATAGTCGCTTAATTGGCGAAAATACAACCTTTACTGTTCCAAATGATGGTCGCCCTTTGG
AGGCCATTGCAGCCGACTACAAGATTGGCCTGTTGGGTATGCTGGAAGCAAACCCAGGGACTGATCCCTATTTGCCATTA
CCGGGGTCAGTACTGACTATTCCGAACCAGATGTTGCTGCCTGACACCCCACGGGAAGGTATCGTCATCAACCTGGCTGA
ACTGCGCCTTTATTATTACCCTAAAGGTCAGAACAAAGTGATTGTTTATCCCATCGGCATTGGTCAGTTAGGGCGTGATA
CACCCACTATGGTTACCTCTATCAGCCAGAAGATCCCTAACCCAACTTGGACGCCAACCGCGAACATCCGTAAAAACTAT
TTGGCAGAAGGTATCACCTTGCCATCAGTGGTTCCGGCCGGTCCTGACAACCCTATGGGGCAGTTTGCTCTGCGTCTGTC
CGCAGGAAGGGGGGAGTACCTGATCCATGGTACTAACGCCGACTTCGGTATCGGTCTACGTGTCAGCTCTGGCTGTATTC
GTTTACGTCCAGATGACATTGAAGCACTGTTCAACTCAGTTCCTAAAGGCACTCGCGTACAAATCATTAACGAACCCGTT
AAATATGCCGTTGAACCTGATGGTAAACGTTACGTTGAAGTTCATCAGCCGTTGTCCCGTGTAGACAGTGATGATCCACA
AACGATGCCAATCGCGATCGGCAGTGGCTTGCAGAAGTTCATCAACGATAGCCAGACGGATGCTAAAGCGGTTCAGGATG
CGATTGTACGCCGTTCTGGTATGCCAACCATCGTTACTGTGGGTGAAGCTTCTACTCAGCAAGCGCCAACGCCTGTAGCG
TCTCAGGATGAGCAACAGGCACAGGCTGAAGCACTACAACCGACAGAAGAGTCAGTGATGCCTAAGCTGGTTCAGCCCGG
CCCGGTTTATTCAGAAAATAACTAA

Upstream 100 bases:

>100_bases
AATAAGGGCTGTTACTATACATTTGCCTTATTATTGGCTGCTAAAATTAACGTAGATAGCCGTGTAAACCGAATTTGAAG
AAGTGATGTAGGAACTAAGC

Downstream 100 bases:

>100_bases
TCACTTGTCTGCGCTTTACCGTGGTGGAGATCCATCGTGGTAAAGCCAGAATTGTATTCCGCGCTTTAGAGGCTTGTCGT
TGTGAAAGTCAGAATATTAA

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MKRALTLIGMLFATCLAGSLTAANANEYPLPPANSRLIGENTTFTVPNDGRPLEAIAADYKIGLLGMLEANPGTDPYLPL
PGSVLTIPNQMLLPDTPREGIVINLAELRLYYYPKGQNKVIVYPIGIGQLGRDTPTMVTSISQKIPNPTWTPTANIRKNY
LAEGITLPSVVPAGPDNPMGQFALRLSAGRGEYLIHGTNADFGIGLRVSSGCIRLRPDDIEALFNSVPKGTRVQIINEPV
KYAVEPDGKRYVEVHQPLSRVDSDDPQTMPIAIGSGLQKFINDSQTDAKAVQDAIVRRSGMPTIVTVGEASTQQAPTPVA
SQDEQQAQAEALQPTEESVMPKLVQPGPVYSENN

Sequences:

>Translated_354_residues
MKRALTLIGMLFATCLAGSLTAANANEYPLPPANSRLIGENTTFTVPNDGRPLEAIAADYKIGLLGMLEANPGTDPYLPL
PGSVLTIPNQMLLPDTPREGIVINLAELRLYYYPKGQNKVIVYPIGIGQLGRDTPTMVTSISQKIPNPTWTPTANIRKNY
LAEGITLPSVVPAGPDNPMGQFALRLSAGRGEYLIHGTNADFGIGLRVSSGCIRLRPDDIEALFNSVPKGTRVQIINEPV
KYAVEPDGKRYVEVHQPLSRVDSDDPQTMPIAIGSGLQKFINDSQTDAKAVQDAIVRRSGMPTIVTVGEASTQQAPTPVA
SQDEQQAQAEALQPTEESVMPKLVQPGPVYSENN
>Mature_354_residues
MKRALTLIGMLFATCLAGSLTAANANEYPLPPANSRLIGENTTFTVPNDGRPLEAIAADYKIGLLGMLEANPGTDPYLPL
PGSVLTIPNQMLLPDTPREGIVINLAELRLYYYPKGQNKVIVYPIGIGQLGRDTPTMVTSISQKIPNPTWTPTANIRKNY
LAEGITLPSVVPAGPDNPMGQFALRLSAGRGEYLIHGTNADFGIGLRVSSGCIRLRPDDIEALFNSVPKGTRVQIINEPV
KYAVEPDGKRYVEVHQPLSRVDSDDPQTMPIAIGSGLQKFINDSQTDAKAVQDAIVRRSGMPTIVTVGEASTQQAPTPVA
SQDEQQAQAEALQPTEESVMPKLVQPGPVYSENN

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=290, Percent_Identity=64.1379310344827, Blast_Score=374, Evalue=1e-105,
Organism=Escherichia coli, GI1787968, Length=341, Percent_Identity=52.7859237536657, Blast_Score=339, Evalue=2e-94,
Organism=Escherichia coli, GI1788299, Length=314, Percent_Identity=53.1847133757962, Blast_Score=316, Evalue=1e-87,
Organism=Escherichia coli, GI1787040, Length=298, Percent_Identity=55.0335570469799, Blast_Score=313, Evalue=1e-86,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 38078; Mature: 38078

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRALTLIGMLFATCLAGSLTAANANEYPLPPANSRLIGENTTFTVPNDGRPLEAIAADY
CCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCEEECCCCEEECCCCCCCHHHHHCCC
KIGLLGMLEANPGTDPYLPLPGSVLTIPNQMLLPDTPREGIVINLAELRLYYYPKGQNKV
EEEEEEEEECCCCCCCCCCCCCCEEECCCCEECCCCCCCCEEEEEEEEEEEEEECCCCEE
IVYPIGIGQLGRDTPTMVTSISQKIPNPTWTPTANIRKNYLAEGITLPSVVPAGPDNPMG
EEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
QFALRLSAGRGEYLIHGTNADFGIGLRVSSGCIRLRPDDIEALFNSVPKGTRVQIINEPV
EEEEEEECCCCCEEEEECCCCEEEEEEEECCEEEECCHHHHHHHHHCCCCCEEEEECCCE
KYAVEPDGKRYVEVHQPLSRVDSDDPQTMPIAIGSGLQKFINDSQTDAKAVQDAIVRRSG
EEEECCCCCEEEHHHHHHHHCCCCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHCC
MPTIVTVGEASTQQAPTPVASQDEQQAQAEALQPTEESVMPKLVQPGPVYSENN
CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHCHHHCCCCCCCCCCC
>Mature Secondary Structure
MKRALTLIGMLFATCLAGSLTAANANEYPLPPANSRLIGENTTFTVPNDGRPLEAIAADY
CCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCEEECCCCEEECCCCCCCHHHHHCCC
KIGLLGMLEANPGTDPYLPLPGSVLTIPNQMLLPDTPREGIVINLAELRLYYYPKGQNKV
EEEEEEEEECCCCCCCCCCCCCCEEECCCCEECCCCCCCCEEEEEEEEEEEEEECCCCEE
IVYPIGIGQLGRDTPTMVTSISQKIPNPTWTPTANIRKNYLAEGITLPSVVPAGPDNPMG
EEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
QFALRLSAGRGEYLIHGTNADFGIGLRVSSGCIRLRPDDIEALFNSVPKGTRVQIINEPV
EEEEEEECCCCCEEEEECCCCEEEEEEEECCEEEECCHHHHHHHHHCCCCCEEEEECCCE
KYAVEPDGKRYVEVHQPLSRVDSDDPQTMPIAIGSGLQKFINDSQTDAKAVQDAIVRRSG
EEEECCCCCEEEHHHHHHHHCCCCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHCC
MPTIVTVGEASTQQAPTPVASQDEQQAQAEALQPTEESVMPKLVQPGPVYSENN
CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]