| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is 153948231
Identifier: 153948231
GI number: 153948231
Start: 3088838
End: 3089434
Strand: Reverse
Name: 153948231
Synonym: YpsIP31758_2735
Alternate gene names: NA
Gene position: 3089434-3088838 (Counterclockwise)
Preceding gene: 153949512
Following gene: 153948677
Centisome position: 65.41
GC content: 51.59
Gene sequence:
>597_bases ATGAGTGATGTCAGTGGGCAAATCTCAACTCTATACCGACAGATAAAAATGCTGCTGGGGATCGGGCGGGTGACCGCTTT TGACGACAGCAACGGAGTGCAAACCGTGCAATATCAAACCCCGTTGGAAGTCCACAGCGATACGCCAAGGTTAGCTGAAT TTGGTTTCTCGTCGGGATTGCCGGCGGGCAGTGATGTGGTCATTGGTTTCCTGGGGGGTGATCGTTCCAGCGGGATGATC ATCGCCTCACATCATCCGGCCTATCGGCATATGGGGCTCAATGCAGGTGAAACGGTGATTTACGCCCAGTGGGGGCAATT TATCAAACTGACCGAGAGTGGGGTGGTGATTGAGGCTAACAACCAGCCGGTGACCGTCAATAATGCGACAGAGGTGACCG TAAATGCCACGGTAAAAGTACGGTTAAATACGCCGTTGCTTGAGGTAAGCGGCAATATCATTGATAACGCTGACAGTAAT AGCGCCACGCTAAAAAGCTTACGTGACGCCTACAACAGCCACAATCATCAACTTAAAAACGTCCAGTCGGGCAGTACGAC ACTTACCAGTGAAACGCCCGCTAAGGTGGTGCGATGA
Upstream 100 bases:
>100_bases TCAGAAAGATGCAAAAGGAACGGTGGCAAATATGGTCTTGATGCCACCCGCTGCATTTGACGTTAAGCCCTATAAAATCA AATGAAACAAGGGGTTAACC
Downstream 100 bases:
>100_bases CAACCGATATTAAGACCGTTTGGGATGTAAATGCCTTGCTGGGGGATTGGCAGACCGGTAACGGCGGCTTACTGGAGGGT GATGACTTGCAGACGGCTAT
Product: phage baseplate assembly protein
Products: NA
Alternate protein names: Bacteriophage Mu; Bacteriophage Protein; Baseplate Assembly Protein; Baseplate Assembly Mu-Like; Phage Baseplate Assembly Protein; Baseplate Assembly Phage Protein
Number of amino acids: Translated: 198; Mature: 197
Protein sequence:
>198_residues MSDVSGQISTLYRQIKMLLGIGRVTAFDDSNGVQTVQYQTPLEVHSDTPRLAEFGFSSGLPAGSDVVIGFLGGDRSSGMI IASHHPAYRHMGLNAGETVIYAQWGQFIKLTESGVVIEANNQPVTVNNATEVTVNATVKVRLNTPLLEVSGNIIDNADSN SATLKSLRDAYNSHNHQLKNVQSGSTTLTSETPAKVVR
Sequences:
>Translated_198_residues MSDVSGQISTLYRQIKMLLGIGRVTAFDDSNGVQTVQYQTPLEVHSDTPRLAEFGFSSGLPAGSDVVIGFLGGDRSSGMI IASHHPAYRHMGLNAGETVIYAQWGQFIKLTESGVVIEANNQPVTVNNATEVTVNATVKVRLNTPLLEVSGNIIDNADSN SATLKSLRDAYNSHNHQLKNVQSGSTTLTSETPAKVVR >Mature_197_residues SDVSGQISTLYRQIKMLLGIGRVTAFDDSNGVQTVQYQTPLEVHSDTPRLAEFGFSSGLPAGSDVVIGFLGGDRSSGMII ASHHPAYRHMGLNAGETVIYAQWGQFIKLTESGVVIEANNQPVTVNNATEVTVNATVKVRLNTPLLEVSGNIIDNADSNS ATLKSLRDAYNSHNHQLKNVQSGSTTLTSETPAKVVR
Specific function: Unknown
COG id: COG4384
COG function: function code S; Mu-like prophage protein gp45
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21213; Mature: 21082
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDVSGQISTLYRQIKMLLGIGRVTAFDDSNGVQTVQYQTPLEVHSDTPRLAEFGFSSGL CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCEECCCCCHHHHCCCCCCC PAGSDVVIGFLGGDRSSGMIIASHHPAYRHMGLNAGETVIYAQWGQFIKLTESGVVIEAN CCCCCEEEEEECCCCCCCEEEEECCCHHHHCCCCCCCEEEEEECCCEEEEECCCEEEECC NQPVTVNNATEVTVNATVKVRLNTPLLEVSGNIIDNADSNSATLKSLRDAYNSHNHQLKN CCEEEECCCEEEEEEEEEEEEECCCEEEECCCEECCCCCCHHHHHHHHHHHHCCCCEEEE VQSGSTTLTSETPAKVVR CCCCCEEECCCCCHHHCC >Mature Secondary Structure SDVSGQISTLYRQIKMLLGIGRVTAFDDSNGVQTVQYQTPLEVHSDTPRLAEFGFSSGL CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCEECCCCCHHHHCCCCCCC PAGSDVVIGFLGGDRSSGMIIASHHPAYRHMGLNAGETVIYAQWGQFIKLTESGVVIEAN CCCCCEEEEEECCCCCCCEEEEECCCHHHHCCCCCCCEEEEEECCCEEEEECCCEEEECC NQPVTVNNATEVTVNATVKVRLNTPLLEVSGNIIDNADSNSATLKSLRDAYNSHNHQLKN CCEEEECCCEEEEEEEEEEEEECCCEEEECCCEECCCCCCHHHHHHHHHHHHCCCCEEEE VQSGSTTLTSETPAKVVR CCCCCEEECCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA