Click here to switch to the map view.

The map label for this gene is glgB [H]

Identifier: 153947987

GI number: 153947987

Start: 4497954

End: 4500137

Strand: Reverse

Name: glgB [H]

Synonym: YpsIP31758_4006

Alternate gene names: 153947987

Gene position: 4500137-4497954 (Counterclockwise)

Preceding gene: 153949538

Following gene: 153948572

Centisome position: 95.28

GC content: 50.32

Gene sequence:

>2184_bases
ATGCCAGTACTTCCCGATCGTCAGGTGATTAATCAGCTTATTTCCGGCCATTATGGCGATCCCTTCTCCATTTTGGGTAT
GCATGAAACCTCGCAGGGGTTGCAGGTTTGTGCATTGCTGCCAGATGCCCAAGAAGTCTGGCTAGTGGAGACAGAGAACG
GGCGGCGGATAGCACAATTAACGCTCGAAGATCCCCGTGGTTTTTTTATTGCACAACTGACTCGTCGTAAGAAATCCTTC
CGCTACCAATTTGCCGTTACCTGGCAAGAAAACCCACAAATCATCGACGATCCTTACCGGTTCGGTCCCTTATTACAGGA
TATTGATAGCTGGTTATTGGCTGAAGGTACCCATTTACGCCCTTATGAACGCTTGGGGGCACATTTAATGCGCCTTGATG
GTGTACCCGGTGTCAGTTTTGCGGTTTGGGCACCGAATGCTCAGCGGGTCTCCGTGGTGGGGGATTTTAACTTTTGGGAT
GGCCGCCGTCATCCGATGCGCTTACGGCGTGAAAATGGCATTTGGGAGCTATTTCTGCCAGGAATAGAGGCGGGGCAGTT
GTATAAGTTTGAGATCATTGATTGCCATGGCCAGGTGCGTCTGAAAGCTGACCCTTACGCTTTTGAAGCGCAGATGCGGC
CAGAAACCGCCTCATTGATTAGCCCGCTACCCGATGTAGTGAAGAGTAGCGCCGCACGGCAAAAAGCCAATGATTTATGT
TCCCCGGTGTCTATCTATGAAGTGCATCTCGGTTCGTGGCGTCGGCATACCGATAATAATTTCTGGTTGAGTTACCGCGA
ATTGGCGGATCAACTGGTCGAATACGTTAAATATATGGGTTTTACCCATGTCGAGCTGCTGCCGATTAACGAACATCCAT
TTGACGGTAGCTGGGGTTATCAGCCGCTAGGATTATATGCACCGACCCGCCGTTACGGCACCCCAGAGGATTTCAAAGCG
TTCGTCGCCAAATTCCATCAGGCAGGAATTAACGTGATCCTTGATTGGGTTCCCGGCCATTTTCCCAGTGATGAGCATGG
ATTATCGACCTTCGATGGCACTGCGTTGTATGAATATGCTGATCCGCGCGAAGGGTACCATCAGGATTGGAATACCCTGA
TCTATAACTATGGTCGTAACGAAGTCCGTAACTATCTGGCGGGCAATGCATTCTACTGGATGGAACGTTTTGGCATCGAT
GCGTTGCGTATTGATGCGGTGGCCTCAATGATTTACCGCGATTATAGCCGTGCTGAAGGGCAGTGGGTGCCTAACTATTA
TGGTGGCCGGGAAAATTTGGAGGCTATCGCTTTCTTGCGTTACACCAATAAGACCATTGGCGTTGAACGCCCCGGCAGTG
TGACCATGGCGGAGGAGTCAACCGACTTTCCTGGTGTGACATTACCGCCTGATATTGGTGGCCTGGGTTTCAACTATAAA
TGGAACATGGGTTGGATGCATGACACGCTGAATTACATGCAATGTGATCCTGTTCACCGCAAATACCACCATAATTTGAT
GACGTTCGGTATGTTATACGCTTATACCGAGAACTTTATCTTACCGCTCTCCCACGATGAAGTGGTCCACGGCAAGCGCT
CGATACTTGATCGTATGCCGGGTGATGCCTGGCAGAAATTTGCCAACCTACGGGCTTATTACGCATTTATGTGGGCGCAT
CCCGGTAAAAAACTGCTGTTTATGGGCTGTGAATTTGCGCAGGGGCGTGAGTGGAATTTCGAAACCAGTCTGGATTGGCA
CCTGCTGGACGATGAAAACGGCTGGCATTCCGGTGTGCAGCGTCTGGTTCGTGACCTTAACCATTGCTATCGCCAGTATG
CGCCGTTGTATGAATGGGATTATCAACCCGCTGGTTTTGAATGGTTGGTGGTTGATGACCACGAAAATTCGGTATTCGCC
TTCCTGCGCCGTGATGCCGAGGGGCACGAACTGATTGCTATCAGTAATTTCACCCCGGTTCCACGTTATCACTACCGTGT
GGGCATTCCACAAGGTGGTCACTACCGTGAAGTGTTGAATTCTGACTCTGCATTTTACTGCGGCAGTAACCTGGGTAATC
AGGGCGGCATTGATAGCCATCATGTGAGGAGCCACAACCACGAGCATTCGTTGTTACTCACCTTGCCACCGCTGGCAACG
ATTTACCTGCTGCGGGAGAACTAG

Upstream 100 bases:

>100_bases
CGCGTTATACATCAAACGGATTGCATGACTGAAAGGCCGACTTTGGACTTTATGGTCCATGGGCCGGTATCAATCATGCT
ATTAATCAAAGGAAGAATGT

Downstream 100 bases:

>100_bases
GATGGCGGTATTAACCCATGGATCACCGACACCTTCTGGCGCCTACTTTGATGGGAAGGGCATTAATTTCACACTATTTT
CAGCCCATGCTGAGCAGGTG

Product: glycogen branching enzyme

Products: NA

Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; Glycogen-branching enzyme; BE [H]

Number of amino acids: Translated: 727; Mature: 726

Protein sequence:

>727_residues
MPVLPDRQVINQLISGHYGDPFSILGMHETSQGLQVCALLPDAQEVWLVETENGRRIAQLTLEDPRGFFIAQLTRRKKSF
RYQFAVTWQENPQIIDDPYRFGPLLQDIDSWLLAEGTHLRPYERLGAHLMRLDGVPGVSFAVWAPNAQRVSVVGDFNFWD
GRRHPMRLRRENGIWELFLPGIEAGQLYKFEIIDCHGQVRLKADPYAFEAQMRPETASLISPLPDVVKSSAARQKANDLC
SPVSIYEVHLGSWRRHTDNNFWLSYRELADQLVEYVKYMGFTHVELLPINEHPFDGSWGYQPLGLYAPTRRYGTPEDFKA
FVAKFHQAGINVILDWVPGHFPSDEHGLSTFDGTALYEYADPREGYHQDWNTLIYNYGRNEVRNYLAGNAFYWMERFGID
ALRIDAVASMIYRDYSRAEGQWVPNYYGGRENLEAIAFLRYTNKTIGVERPGSVTMAEESTDFPGVTLPPDIGGLGFNYK
WNMGWMHDTLNYMQCDPVHRKYHHNLMTFGMLYAYTENFILPLSHDEVVHGKRSILDRMPGDAWQKFANLRAYYAFMWAH
PGKKLLFMGCEFAQGREWNFETSLDWHLLDDENGWHSGVQRLVRDLNHCYRQYAPLYEWDYQPAGFEWLVVDDHENSVFA
FLRRDAEGHELIAISNFTPVPRYHYRVGIPQGGHYREVLNSDSAFYCGSNLGNQGGIDSHHVRSHNHEHSLLLTLPPLAT
IYLLREN

Sequences:

>Translated_727_residues
MPVLPDRQVINQLISGHYGDPFSILGMHETSQGLQVCALLPDAQEVWLVETENGRRIAQLTLEDPRGFFIAQLTRRKKSF
RYQFAVTWQENPQIIDDPYRFGPLLQDIDSWLLAEGTHLRPYERLGAHLMRLDGVPGVSFAVWAPNAQRVSVVGDFNFWD
GRRHPMRLRRENGIWELFLPGIEAGQLYKFEIIDCHGQVRLKADPYAFEAQMRPETASLISPLPDVVKSSAARQKANDLC
SPVSIYEVHLGSWRRHTDNNFWLSYRELADQLVEYVKYMGFTHVELLPINEHPFDGSWGYQPLGLYAPTRRYGTPEDFKA
FVAKFHQAGINVILDWVPGHFPSDEHGLSTFDGTALYEYADPREGYHQDWNTLIYNYGRNEVRNYLAGNAFYWMERFGID
ALRIDAVASMIYRDYSRAEGQWVPNYYGGRENLEAIAFLRYTNKTIGVERPGSVTMAEESTDFPGVTLPPDIGGLGFNYK
WNMGWMHDTLNYMQCDPVHRKYHHNLMTFGMLYAYTENFILPLSHDEVVHGKRSILDRMPGDAWQKFANLRAYYAFMWAH
PGKKLLFMGCEFAQGREWNFETSLDWHLLDDENGWHSGVQRLVRDLNHCYRQYAPLYEWDYQPAGFEWLVVDDHENSVFA
FLRRDAEGHELIAISNFTPVPRYHYRVGIPQGGHYREVLNSDSAFYCGSNLGNQGGIDSHHVRSHNHEHSLLLTLPPLAT
IYLLREN
>Mature_726_residues
PVLPDRQVINQLISGHYGDPFSILGMHETSQGLQVCALLPDAQEVWLVETENGRRIAQLTLEDPRGFFIAQLTRRKKSFR
YQFAVTWQENPQIIDDPYRFGPLLQDIDSWLLAEGTHLRPYERLGAHLMRLDGVPGVSFAVWAPNAQRVSVVGDFNFWDG
RRHPMRLRRENGIWELFLPGIEAGQLYKFEIIDCHGQVRLKADPYAFEAQMRPETASLISPLPDVVKSSAARQKANDLCS
PVSIYEVHLGSWRRHTDNNFWLSYRELADQLVEYVKYMGFTHVELLPINEHPFDGSWGYQPLGLYAPTRRYGTPEDFKAF
VAKFHQAGINVILDWVPGHFPSDEHGLSTFDGTALYEYADPREGYHQDWNTLIYNYGRNEVRNYLAGNAFYWMERFGIDA
LRIDAVASMIYRDYSRAEGQWVPNYYGGRENLEAIAFLRYTNKTIGVERPGSVTMAEESTDFPGVTLPPDIGGLGFNYKW
NMGWMHDTLNYMQCDPVHRKYHHNLMTFGMLYAYTENFILPLSHDEVVHGKRSILDRMPGDAWQKFANLRAYYAFMWAHP
GKKLLFMGCEFAQGREWNFETSLDWHLLDDENGWHSGVQRLVRDLNHCYRQYAPLYEWDYQPAGFEWLVVDDHENSVFAF
LRRDAEGHELIAISNFTPVPRYHYRVGIPQGGHYREVLNSDSAFYCGSNLGNQGGIDSHHVRSHNHEHSLLLTLPPLATI
YLLREN

Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position [H]

COG id: COG0296

COG function: function code G; 1,4-alpha-glucan branching enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI189458812, Length=684, Percent_Identity=26.6081871345029, Blast_Score=178, Evalue=1e-44,
Organism=Escherichia coli, GI1789839, Length=721, Percent_Identity=70.5963938973648, Blast_Score=1089, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17554896, Length=621, Percent_Identity=26.4090177133655, Blast_Score=178, Evalue=8e-45,
Organism=Caenorhabditis elegans, GI32564391, Length=574, Percent_Identity=26.1324041811847, Blast_Score=155, Evalue=8e-38,
Organism=Saccharomyces cerevisiae, GI6320826, Length=639, Percent_Identity=25.9780907668232, Blast_Score=169, Evalue=1e-42,
Organism=Drosophila melanogaster, GI28573410, Length=601, Percent_Identity=27.287853577371, Blast_Score=171, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006407
- InterPro:   IPR006048
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783
- InterPro:   IPR014756 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48 [H]

EC number: =2.4.1.18 [H]

Molecular weight: Translated: 84169; Mature: 84038

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVLPDRQVINQLISGHYGDPFSILGMHETSQGLQVCALLPDAQEVWLVETENGRRIAQL
CCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEE
TLEDPRGFFIAQLTRRKKSFRYQFAVTWQENPQIIDDPYRFGPLLQDIDSWLLAEGTHLR
EEECCCCEEHHHHHHHHHCEEEEEEEEECCCCCEECCCHHHCHHHHHHHHHHHCCCCCCC
PYERLGAHLMRLDGVPGVSFAVWAPNAQRVSVVGDFNFWDGRRHPMRLRRENGIWELFLP
HHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHCCCEEEEEEC
GIEAGQLYKFEIIDCHGQVRLKADPYAFEAQMRPETASLISPLPDVVKSSAARQKANDLC
CCCCCCEEEEEEEECCCEEEEECCCEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHCC
SPVSIYEVHLGSWRRHTDNNFWLSYRELADQLVEYVKYMGFTHVELLPINEHPFDGSWGY
CCCEEEEEECCCCEEECCCCEEEEHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
QPLGLYAPTRRYGTPEDFKAFVAKFHQAGINVILDWVPGHFPSDEHGLSTFDGTALYEYA
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECC
DPREGYHQDWNTLIYNYGRNEVRNYLAGNAFYWMERFGIDALRIDAVASMIYRDYSRAEG
CCCCCCCCCCHHHEEECCHHHHHHHHCCCCEEEHHHHCCCHHHHHHHHHHHHHHHHHCCC
QWVPNYYGGRENLEAIAFLRYTNKTIGVERPGSVTMAEESTDFPGVTLPPDIGGLGFNYK
CCCCCCCCCCCCCEEEEEEEECCCEECCCCCCCEEEECCCCCCCCEECCCCCCCCCCEEE
WNMGWMHDTLNYMQCDPVHRKYHHNLMTFGMLYAYTENFILPLSHDEVVHGKRSILDRMP
ECCCHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHCCHHHHHHCCC
GDAWQKFANLRAYYAFMWAHPGKKLLFMGCEFAQGREWNFETSLDWHLLDDENGWHSGVQ
CHHHHHHHHHHEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHH
RLVRDLNHCYRQYAPLYEWDYQPAGFEWLVVDDHENSVFAFLRRDAEGHELIAISNFTPV
HHHHHHHHHHHHCCCCEECCCCCCCEEEEEEECCCCCEEEEEECCCCCCEEEEECCCCCC
PRYHYRVGIPQGGHYREVLNSDSAFYCGSNLGNQGGIDSHHVRSHNHEHSLLLTLPPLAT
CCEEEEECCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCHHCCCCCCCEEEEEECCCEE
IYLLREN
EEEEECC
>Mature Secondary Structure 
PVLPDRQVINQLISGHYGDPFSILGMHETSQGLQVCALLPDAQEVWLVETENGRRIAQL
CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEE
TLEDPRGFFIAQLTRRKKSFRYQFAVTWQENPQIIDDPYRFGPLLQDIDSWLLAEGTHLR
EEECCCCEEHHHHHHHHHCEEEEEEEEECCCCCEECCCHHHCHHHHHHHHHHHCCCCCCC
PYERLGAHLMRLDGVPGVSFAVWAPNAQRVSVVGDFNFWDGRRHPMRLRRENGIWELFLP
HHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHCCCEEEEEEC
GIEAGQLYKFEIIDCHGQVRLKADPYAFEAQMRPETASLISPLPDVVKSSAARQKANDLC
CCCCCCEEEEEEEECCCEEEEECCCEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHCC
SPVSIYEVHLGSWRRHTDNNFWLSYRELADQLVEYVKYMGFTHVELLPINEHPFDGSWGY
CCCEEEEEECCCCEEECCCCEEEEHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
QPLGLYAPTRRYGTPEDFKAFVAKFHQAGINVILDWVPGHFPSDEHGLSTFDGTALYEYA
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECC
DPREGYHQDWNTLIYNYGRNEVRNYLAGNAFYWMERFGIDALRIDAVASMIYRDYSRAEG
CCCCCCCCCCHHHEEECCHHHHHHHHCCCCEEEHHHHCCCHHHHHHHHHHHHHHHHHCCC
QWVPNYYGGRENLEAIAFLRYTNKTIGVERPGSVTMAEESTDFPGVTLPPDIGGLGFNYK
CCCCCCCCCCCCCEEEEEEEECCCEECCCCCCCEEEECCCCCCCCEECCCCCCCCCCEEE
WNMGWMHDTLNYMQCDPVHRKYHHNLMTFGMLYAYTENFILPLSHDEVVHGKRSILDRMP
ECCCHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHCCHHHHHHCCC
GDAWQKFANLRAYYAFMWAHPGKKLLFMGCEFAQGREWNFETSLDWHLLDDENGWHSGVQ
CHHHHHHHHHHEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHH
RLVRDLNHCYRQYAPLYEWDYQPAGFEWLVVDDHENSVFAFLRRDAEGHELIAISNFTPV
HHHHHHHHHHHHCCCCEECCCCCCCEEEEEEECCCCCEEEEEECCCCCCEEEEECCCCCC
PRYHYRVGIPQGGHYREVLNSDSAFYCGSNLGNQGGIDSHHVRSHNHEHSLLLTLPPLAT
CCEEEEECCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCHHCCCCCCCEEEEEECCCEE
IYLLREN
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA