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The map label for this gene is stfE [H]

Identifier: 153947852

GI number: 153947852

Start: 2519047

End: 2520255

Strand: Reverse

Name: stfE [H]

Synonym: YpsIP31758_2198

Alternate gene names: 153947852

Gene position: 2520255-2519047 (Counterclockwise)

Preceding gene: 153948980

Following gene: 153947916

Centisome position: 53.36

GC content: 47.89

Gene sequence:

>1209_bases
ATGACGAGAAAGGAGAGTTTTAATAAACCGTGGGCCAGTGTACCTGTTCAATTTGAACGCCCCGGTGATGCTCTGATTGC
TCGAGGTTGGGCAGGGGGAGCATCAGAGGATCCCCCAGAGGCTAAATGGGAGAACTGGTGGCATAACCGGGTCGATTTGG
CCTTACAGGAATTGCAAAACCTTGGTCAGTTGATTTGGTTTGCTGATGCACCCTATCAGGTCGGTGCGAGAGTCAATCAT
GGTGGTAATCACTATCTCGCATTAGTAGAAAACTCAGGGATAGAGCCAACAGGCGCATTAGATATTGGCGTGTGGCGTAA
AGAAAATGCCAATACCTATTTGCAGACAGCCAATCACTTTTCGGAAATAGCAGCTGCGGGGCCTGCTGCCGTTGCGCAGG
CTCTTACAAACCTTGGTTTAAAGGAAGCAGCGAAACGGGATGTGGGAACGTCGAATGATACCGTTGCATCAGGCGGAGAT
TCACGGATAGTAAATGCCTTCCAGCTTCGCTCTGTTTTAGACGAAATTAACCTCAATAGCCTAGGTCAAGATGCACTCGG
TATTTATGTGCAAGCTTTGGATGTGTTTGCCACTTTAGACCGAAATTACCCCATTACTATTGCTGGTTCATTAGTTGTAC
GCCCCTCAGCTTACGGTGCTCAGCAGGAATATACCCCATTTTATACCGGGCGAAAATATGTCCGTAATTTAATGGGGGTA
TGGAATGGTAATGGCCCGTGGAGTGACTGGATCCAAATCGGGAATGATGTCGCCCCAGTAGGAATTCCTATGCCGTGGCC
AGCTCATATCCCACCGTCAGGGTGGCTAAAATGTAATGGTGCTACATTCAATAAAGCGCAATTTCCTCAGCTAGCATCTG
TCTATACCCGTGGTGTTTTACCCGATTTGCGCGGGGAGTTTATTCGCGGCTGGGATGATGGAAAGTTGGCTGATCCGGGA
CGCGGATTATTAAGCTTTCAGGAAGGGACCGTTGTGGGCGGTTATGATGATAACGATACCGGCGATATTAGCTCTATCGG
CTTATATAGTAGTGGTTTTGGCGATCAACTCACCAATACTCAGTGGGTCAGTATTAACGGGAAACGATGGATCACTGCTG
GCGTAAGTTCAATACGTTACGAATGGTATGCCTACCTGTCTACTCGGCCTCGTAACATTGCATTTAACTACATTGTGAGG
GCAAGATAA

Upstream 100 bases:

>100_bases
ACGCGGGACAGATCCGGCTTAATCATCATCCCTTTGCCTATAAAGGCACATTCGATGCACAACCGTACGGTAACGGCGCT
TATATATAATTGGAGCTTAT

Downstream 100 bases:

>100_bases
TGACGACAGTAATTAAAACCCCGGCGGTACTGAATAAAAGCAACCAGGCCCAACTTGCAGGTTGGGTAACTGTATTTAAT
ATTCATCCTGATAGCCGAGA

Product: tail collar domain-containing protein

Products: NA

Alternate protein names: Side tail fiber protein homolog from lambdoid prophage e14 [H]

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MTRKESFNKPWASVPVQFERPGDALIARGWAGGASEDPPEAKWENWWHNRVDLALQELQNLGQLIWFADAPYQVGARVNH
GGNHYLALVENSGIEPTGALDIGVWRKENANTYLQTANHFSEIAAAGPAAVAQALTNLGLKEAAKRDVGTSNDTVASGGD
SRIVNAFQLRSVLDEINLNSLGQDALGIYVQALDVFATLDRNYPITIAGSLVVRPSAYGAQQEYTPFYTGRKYVRNLMGV
WNGNGPWSDWIQIGNDVAPVGIPMPWPAHIPPSGWLKCNGATFNKAQFPQLASVYTRGVLPDLRGEFIRGWDDGKLADPG
RGLLSFQEGTVVGGYDDNDTGDISSIGLYSSGFGDQLTNTQWVSINGKRWITAGVSSIRYEWYAYLSTRPRNIAFNYIVR
AR

Sequences:

>Translated_402_residues
MTRKESFNKPWASVPVQFERPGDALIARGWAGGASEDPPEAKWENWWHNRVDLALQELQNLGQLIWFADAPYQVGARVNH
GGNHYLALVENSGIEPTGALDIGVWRKENANTYLQTANHFSEIAAAGPAAVAQALTNLGLKEAAKRDVGTSNDTVASGGD
SRIVNAFQLRSVLDEINLNSLGQDALGIYVQALDVFATLDRNYPITIAGSLVVRPSAYGAQQEYTPFYTGRKYVRNLMGV
WNGNGPWSDWIQIGNDVAPVGIPMPWPAHIPPSGWLKCNGATFNKAQFPQLASVYTRGVLPDLRGEFIRGWDDGKLADPG
RGLLSFQEGTVVGGYDDNDTGDISSIGLYSSGFGDQLTNTQWVSINGKRWITAGVSSIRYEWYAYLSTRPRNIAFNYIVR
AR
>Mature_401_residues
TRKESFNKPWASVPVQFERPGDALIARGWAGGASEDPPEAKWENWWHNRVDLALQELQNLGQLIWFADAPYQVGARVNHG
GNHYLALVENSGIEPTGALDIGVWRKENANTYLQTANHFSEIAAAGPAAVAQALTNLGLKEAAKRDVGTSNDTVASGGDS
RIVNAFQLRSVLDEINLNSLGQDALGIYVQALDVFATLDRNYPITIAGSLVVRPSAYGAQQEYTPFYTGRKYVRNLMGVW
NGNGPWSDWIQIGNDVAPVGIPMPWPAHIPPSGWLKCNGATFNKAQFPQLASVYTRGVLPDLRGEFIRGWDDGKLADPGR
GLLSFQEGTVVGGYDDNDTGDISSIGLYSSGFGDQLTNTQWVSINGKRWITAGVSSIRYEWYAYLSTRPRNIAFNYIVRA
R

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tail fiber family [H]

Homologues:

Organism=Escherichia coli, GI1787829, Length=88, Percent_Identity=40.9090909090909, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI87081892, Length=121, Percent_Identity=34.7107438016529, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011083 [H]

Pfam domain/function: PF07484 Collar [H]

EC number: NA

Molecular weight: Translated: 44109; Mature: 43977

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRKESFNKPWASVPVQFERPGDALIARGWAGGASEDPPEAKWENWWHNRVDLALQELQN
CCCCCCCCCCHHHCCEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LGQLIWFADAPYQVGARVNHGGNHYLALVENSGIEPTGALDIGVWRKENANTYLQTANHF
CCCEEEEECCCHHCCCEEECCCCEEEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHH
SEIAAAGPAAVAQALTNLGLKEAAKRDVGTSNDTVASGGDSRIVNAFQLRSVLDEINLNS
HHHHHCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
LGQDALGIYVQALDVFATLDRNYPITIAGSLVVRPSAYGAQQEYTPFYTGRKYVRNLMGV
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHC
WNGNGPWSDWIQIGNDVAPVGIPMPWPAHIPPSGWLKCNGATFNKAQFPQLASVYTRGVL
CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCC
PDLRGEFIRGWDDGKLADPGRGLLSFQEGTVVGGYDDNDTGDISSIGLYSSGFGDQLTNT
CHHHHHHCCCCCCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
QWVSINGKRWITAGVSSIRYEWYAYLSTRPRNIAFNYIVRAR
EEEEECCCEEEECCHHHHEEEEEEEEECCCCCEEEEEEEECC
>Mature Secondary Structure 
TRKESFNKPWASVPVQFERPGDALIARGWAGGASEDPPEAKWENWWHNRVDLALQELQN
CCCCCCCCCHHHCCEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LGQLIWFADAPYQVGARVNHGGNHYLALVENSGIEPTGALDIGVWRKENANTYLQTANHF
CCCEEEEECCCHHCCCEEECCCCEEEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHH
SEIAAAGPAAVAQALTNLGLKEAAKRDVGTSNDTVASGGDSRIVNAFQLRSVLDEINLNS
HHHHHCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
LGQDALGIYVQALDVFATLDRNYPITIAGSLVVRPSAYGAQQEYTPFYTGRKYVRNLMGV
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHC
WNGNGPWSDWIQIGNDVAPVGIPMPWPAHIPPSGWLKCNGATFNKAQFPQLASVYTRGVL
CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCC
PDLRGEFIRGWDDGKLADPGRGLLSFQEGTVVGGYDDNDTGDISSIGLYSSGFGDQLTNT
CHHHHHHCCCCCCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
QWVSINGKRWITAGVSSIRYEWYAYLSTRPRNIAFNYIVRAR
EEEEECCCEEEECCHHHHEEEEEEEEECCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3894006; 8905232; 9278503 [H]