| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is 153947475
Identifier: 153947475
GI number: 153947475
Start: 4603688
End: 4605151
Strand: Reverse
Name: 153947475
Synonym: YpsIP31758_4082
Alternate gene names: NA
Gene position: 4605151-4603688 (Counterclockwise)
Preceding gene: 153948612
Following gene: 153949028
Centisome position: 97.5
GC content: 47.88
Gene sequence:
>1464_bases ATGCCTGCCATAGCGATTAAGCGATGGATTAAACGGATTGTACTGGTATTGGTAGTAATAAGTATTACCATACTGGCAAT ACGTATCTACGATACACAACGTGGTCCAAAGCTTGAACTTTGGCACACTTTCGTTCCTCATGAAATGCGCGCAGCAGAGA TAGATAAAGCCAGTTGGGCGGATTACATAAAAACTGAAAATAATATTTTCGATGAAGTCCGAATTAATGTTACGGAGAAA CTGGAACCAAGTACTCAGGTTCCTCTGAATCGTTATTATTCTGGTAGCGCAATTTATCCCCCTCATTTTAAAAATGATTG GAATCGCTCTTATATTCTCCAACCTGAAGGTGAGCCAAAAGGTGCGGTTGTATTACTGCATGGTTTGACCGATACCCCTT ATAGCTTGCGTCACATTGCTGAAAATTATCGTCAGCGTGGTTATGTTGCGATTGGTATTCGCTTGCCAGCGCATGGTTCG GTACCCGCCGCGTTAACCGATGTTGAATGGCAGGATTGGTTGGCAGCAACCCGGCTGGCAGTACGTGAAGCCAAAGCACT TAGCGGCCCAGATTTGCCATTACATGTCGTTGGTTTCTCCAATGGTGGCGCGCTGGCAATGAAGTACACGCTGGACTCCA TGGATGATCCTAAACTGGCAAAACCTGCTCGGGTTATCTTAATATCCCCGATGATTGGTGTGACCAGTTTTGCTCGCTTT GCCGGTATTGCCGGTTGGCCCGCTATCTTCCCAGCGTTTGCCAAAGCCGCTTGGTTGGGGATCGTTCCAGAGTTTAACCC TTTCAAATATAATTCGTTCCCGGTAAATGCGGCGCGTCAGTCTTATTTGTTGACCTCTGTGCTTCAACAGCATATTGCCC GTGATGCCAGAAACAATAAAATGGACGAATTGCCACCAATCCTGACGTTCCAGTCACTGATGGATTCAACGGTAAGTACT CGGGCAGTGGTCACCGCGCTTTACAACCACCTGCCGAATAATGGCAGCGAAGTCGTATTGTTCGATTTGAACCGCGCTGC TAGTTTTGGCCCATTGTTGAGAACTTCATCTTATACGGCCTTGGCGCGCTTATTACCGCCGGGACCGCGTAATTACAGCA CAACAGTGATTACCAATGTTTCGCCGCAAAGTAATGAGACTCTGGCATTAACCACGCGGGCTGGTGAAACGAACGAAACA TCTGTGCCGACAGGGTTGGTTTATCCACCGGATATCTTCTCGTTATCTCACGTGGCGTTACCCTTCCCGATGAGCGACTC GCTGTATGGCCGTTACCCCGATCCGCGTGATCAATACGGTATTAGTCTGGGGACTTTTGCAGCTCGTGGTGAGCGGGCTG TGTTAGTGGTTGGGCTAGATTCGCTGATGCGTATCTCATCGAACCCGTTCTATCCATATATGTTGCAACGGATAGATGAC AAGATAGATGCGCCGGTTCAATAA
Upstream 100 bases:
>100_bases TATACCAAGATAATCATTTCCGTTTAAAGTACTGACGTGACCAGACGGTGATAAACTGCCCTCAATTGTGAGAAATTATA GACCTACGGAGTAACGGCCC
Downstream 100 bases:
>100_bases TTTGCCTGCAAAAAACCAGGCTGCTGGCAACGTGCTCGCGACGGAGAGAACCGGCAGCAAGTAAAGATGCCCGCTTCCCT GTATAAAAATAGCTTCCTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 487; Mature: 486
Protein sequence:
>487_residues MPAIAIKRWIKRIVLVLVVISITILAIRIYDTQRGPKLELWHTFVPHEMRAAEIDKASWADYIKTENNIFDEVRINVTEK LEPSTQVPLNRYYSGSAIYPPHFKNDWNRSYILQPEGEPKGAVVLLHGLTDTPYSLRHIAENYRQRGYVAIGIRLPAHGS VPAALTDVEWQDWLAATRLAVREAKALSGPDLPLHVVGFSNGGALAMKYTLDSMDDPKLAKPARVILISPMIGVTSFARF AGIAGWPAIFPAFAKAAWLGIVPEFNPFKYNSFPVNAARQSYLLTSVLQQHIARDARNNKMDELPPILTFQSLMDSTVST RAVVTALYNHLPNNGSEVVLFDLNRAASFGPLLRTSSYTALARLLPPGPRNYSTTVITNVSPQSNETLALTTRAGETNET SVPTGLVYPPDIFSLSHVALPFPMSDSLYGRYPDPRDQYGISLGTFAARGERAVLVVGLDSLMRISSNPFYPYMLQRIDD KIDAPVQ
Sequences:
>Translated_487_residues MPAIAIKRWIKRIVLVLVVISITILAIRIYDTQRGPKLELWHTFVPHEMRAAEIDKASWADYIKTENNIFDEVRINVTEK LEPSTQVPLNRYYSGSAIYPPHFKNDWNRSYILQPEGEPKGAVVLLHGLTDTPYSLRHIAENYRQRGYVAIGIRLPAHGS VPAALTDVEWQDWLAATRLAVREAKALSGPDLPLHVVGFSNGGALAMKYTLDSMDDPKLAKPARVILISPMIGVTSFARF AGIAGWPAIFPAFAKAAWLGIVPEFNPFKYNSFPVNAARQSYLLTSVLQQHIARDARNNKMDELPPILTFQSLMDSTVST RAVVTALYNHLPNNGSEVVLFDLNRAASFGPLLRTSSYTALARLLPPGPRNYSTTVITNVSPQSNETLALTTRAGETNET SVPTGLVYPPDIFSLSHVALPFPMSDSLYGRYPDPRDQYGISLGTFAARGERAVLVVGLDSLMRISSNPFYPYMLQRIDD KIDAPVQ >Mature_486_residues PAIAIKRWIKRIVLVLVVISITILAIRIYDTQRGPKLELWHTFVPHEMRAAEIDKASWADYIKTENNIFDEVRINVTEKL EPSTQVPLNRYYSGSAIYPPHFKNDWNRSYILQPEGEPKGAVVLLHGLTDTPYSLRHIAENYRQRGYVAIGIRLPAHGSV PAALTDVEWQDWLAATRLAVREAKALSGPDLPLHVVGFSNGGALAMKYTLDSMDDPKLAKPARVILISPMIGVTSFARFA GIAGWPAIFPAFAKAAWLGIVPEFNPFKYNSFPVNAARQSYLLTSVLQQHIARDARNNKMDELPPILTFQSLMDSTVSTR AVVTALYNHLPNNGSEVVLFDLNRAASFGPLLRTSSYTALARLLPPGPRNYSTTVITNVSPQSNETLALTTRAGETNETS VPTGLVYPPDIFSLSHVALPFPMSDSLYGRYPDPRDQYGISLGTFAARGERAVLVVGLDSLMRISSNPFYPYMLQRIDDK IDAPVQ
Specific function: Unknown
COG id: COG2267
COG function: function code I; Lysophospholipase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54060; Mature: 53928
Theoretical pI: Translated: 9.27; Mature: 9.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAIAIKRWIKRIVLVLVVISITILAIRIYDTQRGPKLELWHTFVPHEMRAAEIDKASWA CCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCEEEEEEECCCCHHHHHHCCHHHHH DYIKTENNIFDEVRINVTEKLEPSTQVPLNRYYSGSAIYPPHFKNDWNRSYILQPEGEPK HHHHCCCCCEEHEEEEEHHCCCCCCCCCHHHCCCCCEECCCCCCCCCCCEEEECCCCCCC GAVVLLHGLTDTPYSLRHIAENYRQRGYVAIGIRLPAHGSVPAALTDVEWQDWLAATRLA CEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCCEEECCCHHHHHHHHHHH VREAKALSGPDLPLHVVGFSNGGALAMKYTLDSMDDPKLAKPARVILISPMIGVTSFARF HHHHHHCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHH AGIAGWPAIFPAFAKAAWLGIVPEFNPFKYNSFPVNAARQSYLLTSVLQQHIARDARNNK HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC MDELPPILTFQSLMDSTVSTRAVVTALYNHLPNNGSEVVLFDLNRAASFGPLLRTSSYTA CHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHCCCHHH LARLLPPGPRNYSTTVITNVSPQSNETLALTTRAGETNETSVPTGLVYPPDIFSLSHVAL HHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE PFPMSDSLYGRYPDPRDQYGISLGTFAARGERAVLVVGLDSLMRISSNPFYPYMLQRIDD CCCCCCCCCCCCCCCHHHCCCEEEHHHCCCCCEEEEEECHHHHHHCCCCCHHHHHHHHHH KIDAPVQ CCCCCCC >Mature Secondary Structure PAIAIKRWIKRIVLVLVVISITILAIRIYDTQRGPKLELWHTFVPHEMRAAEIDKASWA CHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCEEEEEEECCCCHHHHHHCCHHHHH DYIKTENNIFDEVRINVTEKLEPSTQVPLNRYYSGSAIYPPHFKNDWNRSYILQPEGEPK HHHHCCCCCEEHEEEEEHHCCCCCCCCCHHHCCCCCEECCCCCCCCCCCEEEECCCCCCC GAVVLLHGLTDTPYSLRHIAENYRQRGYVAIGIRLPAHGSVPAALTDVEWQDWLAATRLA CEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCCEEECCCHHHHHHHHHHH VREAKALSGPDLPLHVVGFSNGGALAMKYTLDSMDDPKLAKPARVILISPMIGVTSFARF HHHHHHCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHH AGIAGWPAIFPAFAKAAWLGIVPEFNPFKYNSFPVNAARQSYLLTSVLQQHIARDARNNK HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC MDELPPILTFQSLMDSTVSTRAVVTALYNHLPNNGSEVVLFDLNRAASFGPLLRTSSYTA CHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHCCCHHH LARLLPPGPRNYSTTVITNVSPQSNETLALTTRAGETNETSVPTGLVYPPDIFSLSHVAL HHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE PFPMSDSLYGRYPDPRDQYGISLGTFAARGERAVLVVGLDSLMRISSNPFYPYMLQRIDD CCCCCCCCCCCCCCCHHHCCCEEEHHHCCCCCEEEEEECHHHHHHCCCCCHHHHHHHHHH KIDAPVQ CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA