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The map label for this gene is yggS [H]

Identifier: 153947334

GI number: 153947334

Start: 1008514

End: 1009212

Strand: Reverse

Name: yggS [H]

Synonym: YpsIP31758_0830

Alternate gene names: 153947334

Gene position: 1009212-1008514 (Counterclockwise)

Preceding gene: 153948095

Following gene: 153946910

Centisome position: 21.37

GC content: 48.78

Gene sequence:

>699_bases
ATGAGTACTATCCAACAGAATCTACAGGATGTCAGAGCGCGGATCGCAACGGCTGCACACAATTGCGGGCGCTCTCCAGA
AGAAGTTACATTGCTTGCAGTCAGTAAAACCAAACCTGTGGCGGCTATCGAAAAAGCCATCGCCGCTGGGCAATATGCTT
TTGGTGAAAACTATGTGCAGGAAGGGGTGGATAAAATTCACTCCTTCGCGGATAACAAAACGCTTGAATGGCACTTTATC
GGGCCGCTGCAATCCAATAAAAGCCGGTTAGTGGCTGAAAATTTTGCCTGGTGTCATACCGTTGATCGGTTGAAAATAGC
CCAGCGTCTGAGTGCCCAGCGCCCAGCGGCTATGCCAGCATTAAACATACTGATTCAGATTAATATCAGTGATGAGCAAA
GCAAAGCGGGGATTTCCTTGAGTGAACTCCCCGCCTTGGCTGACAGCATTAGTACATTACCTAACCTGTGTTTACGCGGG
CTGATGGCTATCCCAGCGCCAGAACATGATTATCAGCGGCAATTGGCCGTATTTACGCAAATGAATCAGGCGTTCTTGAC
TTTAAAAGCCCGCTCCCCTCAGATAGATACACTTTCTATGGGGATGACTGATGATATGGACGCCGCCATTAGCGCCGGCA
GTACACTGGTTCGAATTGGTACCGCCATTTTTGGTGCCCGCGTTTATAATGCGGATTAA

Upstream 100 bases:

>100_bases
ATCAATGCGTTTGGCTTTTATACGGCTAAACACGGGGTTATTCAGATCTGAATGTTGATTATTCAGGCTTGTGAAATCCA
TATCCAACTCCTGGGTCCAT

Downstream 100 bases:

>100_bases
TCACGGCATTTATTGTTCACTGCACTTACGGAACATAACTCTCTGTTGAACGTAATTATTTGTTGAACATCAGTTCCTGT
TGAACATAAGTCCTCGTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MSTIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQEGVDKIHSFADNKTLEWHFI
GPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPALNILIQINISDEQSKAGISLSELPALADSISTLPNLCLRG
LMAIPAPEHDYQRQLAVFTQMNQAFLTLKARSPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGARVYNAD

Sequences:

>Translated_232_residues
MSTIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQEGVDKIHSFADNKTLEWHFI
GPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPALNILIQINISDEQSKAGISLSELPALADSISTLPNLCLRG
LMAIPAPEHDYQRQLAVFTQMNQAFLTLKARSPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGARVYNAD
>Mature_231_residues
STIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQEGVDKIHSFADNKTLEWHFIG
PLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPALNILIQINISDEQSKAGISLSELPALADSISTLPNLCLRGL
MAIPAPEHDYQRQLAVFTQMNQAFLTLKARSPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGARVYNAD

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=216, Percent_Identity=38.8888888888889, Blast_Score=120, Evalue=8e-28,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=68.1034482758621, Blast_Score=320, Evalue=5e-89,
Organism=Caenorhabditis elegans, GI17533025, Length=245, Percent_Identity=33.469387755102, Blast_Score=115, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6319435, Length=238, Percent_Identity=35.2941176470588, Blast_Score=110, Evalue=2e-25,
Organism=Drosophila melanogaster, GI45550861, Length=243, Percent_Identity=38.6831275720165, Blast_Score=133, Evalue=9e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25220; Mature: 25089

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHH
EGVDKIHSFADNKTLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPA
HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
LNILIQINISDEQSKAGISLSELPALADSISTLPNLCLRGLMAIPAPEHDYQRQLAVFTQ
EEEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
MNQAFLTLKARSPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGARVYNAD
HCHHEEEEECCCCCCCEEECCCCCCHHHHHHCCCHHHHHHHHHHHCEEECCC
>Mature Secondary Structure 
STIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQ
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHH
EGVDKIHSFADNKTLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPA
HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
LNILIQINISDEQSKAGISLSELPALADSISTLPNLCLRGLMAIPAPEHDYQRQLAVFTQ
EEEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
MNQAFLTLKARSPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGARVYNAD
HCHHEEEEECCCCCCCEEECCCCCCHHHHHHCCCHHHHHHHHHHHCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]