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The map label for this gene is ygfI [H]

Identifier: 153947294

GI number: 153947294

Start: 494332

End: 495219

Strand: Reverse

Name: ygfI [H]

Synonym: YpsIP31758_0417

Alternate gene names: 153947294

Gene position: 495219-494332 (Counterclockwise)

Preceding gene: 153950653

Following gene: 153948408

Centisome position: 10.48

GC content: 31.87

Gene sequence:

>888_bases
ATGTTTATATCAAAAAACTTACTCGTATTCTTTACTACGGTTCAAGAGGGATCGTTGACTAATGCAGCGATGAAACTATT
CACAACACCGCCCCCCATGAGTAGAAGCTTAAAAATACTGGAGGAGGAACTGGGTTTCAAATTATTTACGCGAACAACAT
CAGGATTAAAACTGACATTGGAAGGTGCTGCTTTTTATCAAGAAATTTATCCAACCTACGTACGATTAACCGAAATAACA
AAAAATTATAAAAAAAACAAAAATGGCATCATAAATATCGCCACCTATCAAATGAATTCATTACACGCTGGTGTCATATG
TGATTACTTTATAAAAAAAGGAATTTTAAACATAGAGTTAAGAGAAAATATTGATGATGTTAGTCAAATGGATATCGTCA
TCAGTACCAAAGAGATAAAAGGATATGATTTCGATGTTGAGCTAACTGCCAATTGTAAAACAAGTTTGTTGTATGCAACA
TATTTGAATAATTTACCTAATAAAAAAGAATATTTAAAAAAACTTCCCTTTATACAAAGTGGTATCTTTTGTTCTTCCTG
CTGCTTTAATAAATTTTTACACAGTCTAAGGCAACAAGGTTATTCAGGGAATATATTACATGTTGATGATCCTCGAGTTC
GTCATGATCTAATTAGAAAAGGTGCAGGACTTTCCCTATCAAAAAACTATTCTATTGACAATAGAGGCATGAACCACTCT
ACCGAGATAAGTATCTTATCAGATATTAGTTTTAACATTACCTATTATATTTACTTTAAAAGCTCAGTGATTAACAAAGA
ATTTTTCATCCAACATATCATGAAAAATTCACTCCTGAAATGGCAGGAAACAGCAGAAAAAACTGAGTTAGATACAGCAC
GTAGTTAA

Upstream 100 bases:

>100_bases
TAACACTAATTATTCTAATATATGAAATAGACTTAAATTATATTATAGATATATTGTATATCTACATATCGCGACAACTA
ATAGTAAATAAGTGGTGCAT

Downstream 100 bases:

>100_bases
CTGATATGCAGTTAAATAAATGTAGCTAAACGAAAAAAATACCAAACAGAAACGATACAGGTTTTTTCACACCAAAAACT
GCTGGAGTTTCAGCAAAATA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MFISKNLLVFFTTVQEGSLTNAAMKLFTTPPPMSRSLKILEEELGFKLFTRTTSGLKLTLEGAAFYQEIYPTYVRLTEIT
KNYKKNKNGIINIATYQMNSLHAGVICDYFIKKGILNIELRENIDDVSQMDIVISTKEIKGYDFDVELTANCKTSLLYAT
YLNNLPNKKEYLKKLPFIQSGIFCSSCCFNKFLHSLRQQGYSGNILHVDDPRVRHDLIRKGAGLSLSKNYSIDNRGMNHS
TEISILSDISFNITYYIYFKSSVINKEFFIQHIMKNSLLKWQETAEKTELDTARS

Sequences:

>Translated_295_residues
MFISKNLLVFFTTVQEGSLTNAAMKLFTTPPPMSRSLKILEEELGFKLFTRTTSGLKLTLEGAAFYQEIYPTYVRLTEIT
KNYKKNKNGIINIATYQMNSLHAGVICDYFIKKGILNIELRENIDDVSQMDIVISTKEIKGYDFDVELTANCKTSLLYAT
YLNNLPNKKEYLKKLPFIQSGIFCSSCCFNKFLHSLRQQGYSGNILHVDDPRVRHDLIRKGAGLSLSKNYSIDNRGMNHS
TEISILSDISFNITYYIYFKSSVINKEFFIQHIMKNSLLKWQETAEKTELDTARS
>Mature_295_residues
MFISKNLLVFFTTVQEGSLTNAAMKLFTTPPPMSRSLKILEEELGFKLFTRTTSGLKLTLEGAAFYQEIYPTYVRLTEIT
KNYKKNKNGIINIATYQMNSLHAGVICDYFIKKGILNIELRENIDDVSQMDIVISTKEIKGYDFDVELTANCKTSLLYAT
YLNNLPNKKEYLKKLPFIQSGIFCSSCCFNKFLHSLRQQGYSGNILHVDDPRVRHDLIRKGAGLSLSKNYSIDNRGMNHS
TEISILSDISFNITYYIYFKSSVINKEFFIQHIMKNSLLKWQETAEKTELDTARS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082184, Length=201, Percent_Identity=27.8606965174129, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33874; Mature: 33874

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFISKNLLVFFTTVQEGSLTNAAMKLFTTPPPMSRSLKILEEELGFKLFTRTTSGLKLTL
CEECCCEEEEEEEECCCCCCHHHHEEECCCCCCHHHHHHHHHHCCEEEEEECCCCEEEEE
EGAAFYQEIYPTYVRLTEITKNYKKNKNGIINIATYQMNSLHAGVICDYFIKKGILNIEL
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHCCEEEEEE
RENIDDVSQMDIVISTKEIKGYDFDVELTANCKTSLLYATYLNNLPNKKEYLKKLPFIQS
CCCCCCHHHEEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHC
GIFCSSCCFNKFLHSLRQQGYSGNILHVDDPRVRHDLIRKGAGLSLSKNYSIDNRGMNHS
CCHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHCCCCCEEECCCCCCCCCCCCC
TEISILSDISFNITYYIYFKSSVINKEFFIQHIMKNSLLKWQETAEKTELDTARS
CEEEEEEECEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFISKNLLVFFTTVQEGSLTNAAMKLFTTPPPMSRSLKILEEELGFKLFTRTTSGLKLTL
CEECCCEEEEEEEECCCCCCHHHHEEECCCCCCHHHHHHHHHHCCEEEEEECCCCEEEEE
EGAAFYQEIYPTYVRLTEITKNYKKNKNGIINIATYQMNSLHAGVICDYFIKKGILNIEL
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHCCEEEEEE
RENIDDVSQMDIVISTKEIKGYDFDVELTANCKTSLLYATYLNNLPNKKEYLKKLPFIQS
CCCCCCHHHEEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHC
GIFCSSCCFNKFLHSLRQQGYSGNILHVDDPRVRHDLIRKGAGLSLSKNYSIDNRGMNHS
CCHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHCCCCCEEECCCCCCCCCCCCC
TEISILSDISFNITYYIYFKSSVINKEFFIQHIMKNSLLKWQETAEKTELDTARS
CEEEEEEECEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]