| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is 153946983
Identifier: 153946983
GI number: 153946983
Start: 3304940
End: 3306721
Strand: Reverse
Name: 153946983
Synonym: YpsIP31758_2930
Alternate gene names: NA
Gene position: 3306721-3304940 (Counterclockwise)
Preceding gene: 153949901
Following gene: 153948180
Centisome position: 70.01
GC content: 47.08
Gene sequence:
>1782_bases TTGGATAACAGATTTTTTAAAGTGCCGTTCGCGTCAAACGGTGACACGCAAACAATTCAAGACGAAACAGATAACGAGGG GTTTGTTAGTTTTAATGAGGGCTGGGGCGGGGACTACGAGCGTGACTTGAGGACAGACACCCGAGCCAAGCCGGTTGGCC GCAAAGAAATGAATTACGTATTAAATGCGATAACACGAAATATTCGGCAGTATCAAACTACGGGTTTTCCTGAATTTATT ACAGCAGCAGATAATAACGGGGCGGCGTTCGCGTACGATACCGGCGTTGTTGTCATGCACAACAATGCTCTCTATTTGTC ACTTGTTTCAAATAATACCAGCGTCCCCGGCACTGATGAAAGCACATGGCAGGTGTATATTCAGCGCGAATCAACAGAAG GAGAAACCCTCGCGGGGGTGAGTGCGATTAGTGCGATCACGCCGCGACGATTAAAATTAAAAACGGATATCATTGAAAAT AGTATTACTGATATTAGCAGTTCATTAAGCCGCGTCGGTAATCTGCAAGTTGCACAAGTCTATTTAGAGTCGTCGGGGGT TGTCACTTTAACTGTTCCGACTGACTGTGTGCAAATATTGCTCATTGGTCGCTACGTTACTGACGGCGTAGAAAGCCGGG ATCGCTGGGATAGTACTATCTATGCGAATGGAGAGCTTGTTGATACGACGTCATTCTACGGGTTTGTGACTGGCGGCAGT GGCCACGGACACCACCGGCGGGAATTTCTACCTTTTAGTAAATTAATTGATATGCAAGTACTGGCAGGAGACCCAATTAA TTTTCAATACACAAGCAATCGCAACAGTAATACAACATTCACAGTTTTCTACATTCAGGGCGTGAGTACTGAAGAGCCTG ATCAGCCATCAACTATCATCATTTCGCCGCTTAACAGCGTAATCAATGCAGGGACTAGCCAGCAACTGATCGCGATGGTC CTGCCATCAAGTGCCGCAGCTGAATACCCTGTCACGTGGCAAGTATCCGACCCGGCGCTGGGAACTATTGACAGCAACGG CAGGTATTCCGCAAATGTTGGCGCTAGCGGCACACAAAGCGTTATAGCTAGCGTTTCCACGGGACTGGCGTCCACAGCGA TAATAACGCAACACATTTTTCTGGCCGGAATTGAAATTGGTGATGCTCCTGCAGACTTAGTTGCCGGGAATACTTACACC GTACCTGTTACGTATACACCGTCAAATTACACCGAGGCGATACTCACATCATCATCAGACTCAACGAGTGCGACATTATC AGCCCTCGGAACGCTATCAATCAGTAACGCAGGCTCGACAACGTTATCGTTGGCTGGCGCAAATTCTGGTATCACAAAGT CAATAACGATTGTTGCTGTAGATAAAGAAACGCCGGATGTGTTTCTTAAAATTGAAAATAACTTATCTGATGTGTCGAGC ATATCCGAGGCCCGAGAAAATCTTGAACTGGGCGAGCTGGCAACCAAGGATTCGCTAACCGCCGGCGATGTAGGAGCTGT TCATATTGCTGATGTAGCGATAGTTGCAGAGTTGGATTTAAACAGCATGACGGGGCCGGGGGAGTACTTTCAAAACATAT CGAGCAACGCCCTACTGAGTTTAAATTATCCGATCAACGTTGCAGGGGCGTTAAAGGTTTACAGGACAGGTGTTGATGAA GTCGGATGCAGACAAGTGTACATGCCCTATAACTCAACATCAGAGTATCGACGCTACGCGTACGGGGATCCGCTAGTGTT CTCTGCATGGATTGAGAAATAA
Upstream 100 bases:
>100_bases GACATATCAAAAAAGAGGGGGAAACTTTTCGCATCAAAGTATTTATACAATCAAATAATTTCAGTGTACGGCAATGAAAC TCCGGAAAAGGAAATAAAAA
Downstream 100 bases:
>100_bases AAAACCGGGCTTAACTGCCCGGCCTATTCATTCATATTGGGTTTGATGTTTTGGTGATAACGCGGGAATACGGGGGGGGA TCGCGGTGATTTTTGAGGTC
Product: Ig-like domain-containing protein
Products: NA
Alternate protein names: Ig-Like Domain-Containing Protein; Phage Protein; Phage Tail Protein
Number of amino acids: Translated: 593; Mature: 593
Protein sequence:
>593_residues MDNRFFKVPFASNGDTQTIQDETDNEGFVSFNEGWGGDYERDLRTDTRAKPVGRKEMNYVLNAITRNIRQYQTTGFPEFI TAADNNGAAFAYDTGVVVMHNNALYLSLVSNNTSVPGTDESTWQVYIQRESTEGETLAGVSAISAITPRRLKLKTDIIEN SITDISSSLSRVGNLQVAQVYLESSGVVTLTVPTDCVQILLIGRYVTDGVESRDRWDSTIYANGELVDTTSFYGFVTGGS GHGHHRREFLPFSKLIDMQVLAGDPINFQYTSNRNSNTTFTVFYIQGVSTEEPDQPSTIIISPLNSVINAGTSQQLIAMV LPSSAAAEYPVTWQVSDPALGTIDSNGRYSANVGASGTQSVIASVSTGLASTAIITQHIFLAGIEIGDAPADLVAGNTYT VPVTYTPSNYTEAILTSSSDSTSATLSALGTLSISNAGSTTLSLAGANSGITKSITIVAVDKETPDVFLKIENNLSDVSS ISEARENLELGELATKDSLTAGDVGAVHIADVAIVAELDLNSMTGPGEYFQNISSNALLSLNYPINVAGALKVYRTGVDE VGCRQVYMPYNSTSEYRRYAYGDPLVFSAWIEK
Sequences:
>Translated_593_residues MDNRFFKVPFASNGDTQTIQDETDNEGFVSFNEGWGGDYERDLRTDTRAKPVGRKEMNYVLNAITRNIRQYQTTGFPEFI TAADNNGAAFAYDTGVVVMHNNALYLSLVSNNTSVPGTDESTWQVYIQRESTEGETLAGVSAISAITPRRLKLKTDIIEN SITDISSSLSRVGNLQVAQVYLESSGVVTLTVPTDCVQILLIGRYVTDGVESRDRWDSTIYANGELVDTTSFYGFVTGGS GHGHHRREFLPFSKLIDMQVLAGDPINFQYTSNRNSNTTFTVFYIQGVSTEEPDQPSTIIISPLNSVINAGTSQQLIAMV LPSSAAAEYPVTWQVSDPALGTIDSNGRYSANVGASGTQSVIASVSTGLASTAIITQHIFLAGIEIGDAPADLVAGNTYT VPVTYTPSNYTEAILTSSSDSTSATLSALGTLSISNAGSTTLSLAGANSGITKSITIVAVDKETPDVFLKIENNLSDVSS ISEARENLELGELATKDSLTAGDVGAVHIADVAIVAELDLNSMTGPGEYFQNISSNALLSLNYPINVAGALKVYRTGVDE VGCRQVYMPYNSTSEYRRYAYGDPLVFSAWIEK >Mature_593_residues MDNRFFKVPFASNGDTQTIQDETDNEGFVSFNEGWGGDYERDLRTDTRAKPVGRKEMNYVLNAITRNIRQYQTTGFPEFI TAADNNGAAFAYDTGVVVMHNNALYLSLVSNNTSVPGTDESTWQVYIQRESTEGETLAGVSAISAITPRRLKLKTDIIEN SITDISSSLSRVGNLQVAQVYLESSGVVTLTVPTDCVQILLIGRYVTDGVESRDRWDSTIYANGELVDTTSFYGFVTGGS GHGHHRREFLPFSKLIDMQVLAGDPINFQYTSNRNSNTTFTVFYIQGVSTEEPDQPSTIIISPLNSVINAGTSQQLIAMV LPSSAAAEYPVTWQVSDPALGTIDSNGRYSANVGASGTQSVIASVSTGLASTAIITQHIFLAGIEIGDAPADLVAGNTYT VPVTYTPSNYTEAILTSSSDSTSATLSALGTLSISNAGSTTLSLAGANSGITKSITIVAVDKETPDVFLKIENNLSDVSS ISEARENLELGELATKDSLTAGDVGAVHIADVAIVAELDLNSMTGPGEYFQNISSNALLSLNYPINVAGALKVYRTGVDE VGCRQVYMPYNSTSEYRRYAYGDPLVFSAWIEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63673; Mature: 63673
Theoretical pI: Translated: 4.24; Mature: 4.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNRFFKVPFASNGDTQTIQDETDNEGFVSFNEGWGGDYERDLRTDTRAKPVGRKEMNYV CCCCEEEEEECCCCCCCEECCCCCCCCEEEECCCCCCCCCHHCCCCCCCCCCCHHHHHHH LNAITRNIRQYQTTGFPEFITAADNNGAAFAYDTGVVVMHNNALYLSLVSNNTSVPGTDE HHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCEEEEECCEEEEEEECCCCCCCCCCC STWQVYIQRESTEGETLAGVSAISAITPRRLKLKTDIIENSITDISSSLSRVGNLQVAQV CEEEEEEEECCCCCCEEHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCEEEEEE YLESSGVVTLTVPTDCVQILLIGRYVTDGVESRDRWDSTIYANGELVDTTSFYGFVTGGS EEECCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCEEEECCEEEEEEECCC GHGHHRREFLPFSKLIDMQVLAGDPINFQYTSNRNSNTTFTVFYIQGVSTEEPDQPSTII CCCCCHHHCCCHHHHHCEEEECCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCEEE ISPLNSVINAGTSQQLIAMVLPSSAAAEYPVTWQVSDPALGTIDSNGRYSANVGASGTQS EECHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEECCCCEEEECCCCCEEECCCCCCHHH VIASVSTGLASTAIITQHIFLAGIEIGDAPADLVAGNTYTVPVTYTPSNYTEAILTSSSD HHHHHHCCHHHHHHHHHEEEEEEEEECCCCHHHCCCCEEEEEEEECCCCCEEEEEECCCC STSATLSALGTLSISNAGSTTLSLAGANSGITKSITIVAVDKETPDVFLKIENNLSDVSS CCHHEEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEEEEECCCCEEEEEECCCHHHHHH ISEARENLELGELATKDSLTAGDVGAVHIADVAIVAELDLNSMTGPGEYFQNISSNALLS HHHHHHCCCHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCHHHHHCCCCCEEEE LNYPINVAGALKVYRTGVDEVGCRQVYMPYNSTSEYRRYAYGDPLVFSAWIEK ECCCEEEHHEEEEECCCCCCCCCEEEEECCCCCHHHHHHCCCCCEEEEEECCC >Mature Secondary Structure MDNRFFKVPFASNGDTQTIQDETDNEGFVSFNEGWGGDYERDLRTDTRAKPVGRKEMNYV CCCCEEEEEECCCCCCCEECCCCCCCCEEEECCCCCCCCCHHCCCCCCCCCCCHHHHHHH LNAITRNIRQYQTTGFPEFITAADNNGAAFAYDTGVVVMHNNALYLSLVSNNTSVPGTDE HHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCEEEEECCEEEEEEECCCCCCCCCCC STWQVYIQRESTEGETLAGVSAISAITPRRLKLKTDIIENSITDISSSLSRVGNLQVAQV CEEEEEEEECCCCCCEEHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCEEEEEE YLESSGVVTLTVPTDCVQILLIGRYVTDGVESRDRWDSTIYANGELVDTTSFYGFVTGGS EEECCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCEEEECCEEEEEEECCC GHGHHRREFLPFSKLIDMQVLAGDPINFQYTSNRNSNTTFTVFYIQGVSTEEPDQPSTII CCCCCHHHCCCHHHHHCEEEECCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCEEE ISPLNSVINAGTSQQLIAMVLPSSAAAEYPVTWQVSDPALGTIDSNGRYSANVGASGTQS EECHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEECCCCEEEECCCCCEEECCCCCCHHH VIASVSTGLASTAIITQHIFLAGIEIGDAPADLVAGNTYTVPVTYTPSNYTEAILTSSSD HHHHHHCCHHHHHHHHHEEEEEEEEECCCCHHHCCCCEEEEEEEECCCCCEEEEEECCCC STSATLSALGTLSISNAGSTTLSLAGANSGITKSITIVAVDKETPDVFLKIENNLSDVSS CCHHEEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEEEEECCCCEEEEEECCCHHHHHH ISEARENLELGELATKDSLTAGDVGAVHIADVAIVAELDLNSMTGPGEYFQNISSNALLS HHHHHHCCCHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCHHHHHCCCCCEEEE LNYPINVAGALKVYRTGVDEVGCRQVYMPYNSTSEYRRYAYGDPLVFSAWIEK ECCCEEEHHEEEEECCCCCCCCCEEEEECCCCCHHHHHHCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA