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The map label for this gene is ypdB [H]

Identifier: 153937226

GI number: 153937226

Start: 647648

End: 648349

Strand: Direct

Name: ypdB [H]

Synonym: CLC_0632

Alternate gene names: 153937226

Gene position: 647648-648349 (Clockwise)

Preceding gene: 153934577

Following gene: 153934759

Centisome position: 17.22

GC content: 22.36

Gene sequence:

>702_bases
ATGCACATAGGAATCTGTGGAAATGATGTTGAACAAAGAAATTATTTAAAAAATCATCTAATAAAAATTATTAAAGAAGC
GAAATTAAAGTGTGAATTATTTGAATTTAATTGTGGAGAAGAACTTCTACAAAATTATGAAAAAATGAATATTATATTTT
TAGATATAAATATGGGAAAAATAAATGGAATAGAAATAGCTAAAAAAATAAGAGAGTTTGATTCAGTAGTAGAAATAATA
TTTGTAACAAAGCTTGTGAATTATATTCATCAGGCTTATGAGGTAAGGGCATATAGGTATTTGCTGAGGCCTATAAATTA
TGAAATTATAAAATATGTTACGCTGAATTGTATTAAGGGTATTGAAGCACAAAAGAATTTAGTTATTAAATATAAAGGTG
AAATTATAATTTTAAATATAGATGAAATTACATATATAGAAGTTATGCAAAAGATGTTAACGATACATACTAAAGATAAA
GATTATACATTTAAAATGACTTTATCAAAATTTGAAAAAGAATTATCTCAACATGATTTCTTTAGATGTCACAAAAGTTT
TTTAGTTAATCTTAATAAAGTAAAAGAGTTTAAGGACAATATAATCAATGTTAATGATACCTATATACCTATAAGTAAAT
ATAGGTCTAAAGAGTTTAGACATAAATTAACAAAAATATTAAAAAATTCAATATGGCTTTGA

Upstream 100 bases:

>100_bases
TATTTTCATATTAAATACTGTGTCATCACCTTTTTTATTAGATTCTAGAATTTGCTTGCCCATGAATGCTAAAAAACTAA
TAAAAGGGAGGACATTATAT

Downstream 100 bases:

>100_bases
AAAAAAATCTATTCATCCTAATATAGATATTATTCATGCCAATCATATTGAAAAAATAACGAAAGGATAGTAGAATTTCT
TTAAAGTTAAAATAAAAAAA

Product: LytTr family DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MHIGICGNDVEQRNYLKNHLIKIIKEAKLKCELFEFNCGEELLQNYEKMNIIFLDINMGKINGIEIAKKIREFDSVVEII
FVTKLVNYIHQAYEVRAYRYLLRPINYEIIKYVTLNCIKGIEAQKNLVIKYKGEIIILNIDEITYIEVMQKMLTIHTKDK
DYTFKMTLSKFEKELSQHDFFRCHKSFLVNLNKVKEFKDNIINVNDTYIPISKYRSKEFRHKLTKILKNSIWL

Sequences:

>Translated_233_residues
MHIGICGNDVEQRNYLKNHLIKIIKEAKLKCELFEFNCGEELLQNYEKMNIIFLDINMGKINGIEIAKKIREFDSVVEII
FVTKLVNYIHQAYEVRAYRYLLRPINYEIIKYVTLNCIKGIEAQKNLVIKYKGEIIILNIDEITYIEVMQKMLTIHTKDK
DYTFKMTLSKFEKELSQHDFFRCHKSFLVNLNKVKEFKDNIINVNDTYIPISKYRSKEFRHKLTKILKNSIWL
>Mature_233_residues
MHIGICGNDVEQRNYLKNHLIKIIKEAKLKCELFEFNCGEELLQNYEKMNIIFLDINMGKINGIEIAKKIREFDSVVEII
FVTKLVNYIHQAYEVRAYRYLLRPINYEIIKYVTLNCIKGIEAQKNLVIKYKGEIIILNIDEITYIEVMQKMLTIHTKDK
DYTFKMTLSKFEKELSQHDFFRCHKSFLVNLNKVKEFKDNIINVNDTYIPISKYRSKEFRHKLTKILKNSIWL

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=241, Percent_Identity=29.4605809128631, Blast_Score=96, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27886; Mature: 27886

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIGICGNDVEQRNYLKNHLIKIIKEAKLKCELFEFNCGEELLQNYEKMNIIFLDINMGK
CEEECCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHCEEEEEEECCCC
INGIEIAKKIREFDSVVEIIFVTKLVNYIHQAYEVRAYRYLLRPINYEIIKYVTLNCIKG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
IEAQKNLVIKYKGEIIILNIDEITYIEVMQKMLTIHTKDKDYTFKMTLSKFEKELSQHDF
CCCCCCEEEEEECCEEEEEECCHHHHHHHHHHHHEECCCCCEEEEHHHHHHHHHHHHHHH
FRCHKSFLVNLNKVKEFKDNIINVNDTYIPISKYRSKEFRHKLTKILKNSIWL
HHHHHHHHHHHHHHHHHHHCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHIGICGNDVEQRNYLKNHLIKIIKEAKLKCELFEFNCGEELLQNYEKMNIIFLDINMGK
CEEECCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHCEEEEEEECCCC
INGIEIAKKIREFDSVVEIIFVTKLVNYIHQAYEVRAYRYLLRPINYEIIKYVTLNCIKG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
IEAQKNLVIKYKGEIIILNIDEITYIEVMQKMLTIHTKDKDYTFKMTLSKFEKELSQHDF
CCCCCCEEEEEECCEEEEEECCHHHHHHHHHHHHEECCCCCEEEEHHHHHHHHHHHHHHH
FRCHKSFLVNLNKVKEFKDNIINVNDTYIPISKYRSKEFRHKLTKILKNSIWL
HHHHHHHHHHHHHHHHHHHCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]