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The map label for this gene is 153936558

Identifier: 153936558

GI number: 153936558

Start: 438278

End: 439582

Strand: Direct

Name: 153936558

Synonym: CLC_0441

Alternate gene names: NA

Gene position: 438278-439582 (Clockwise)

Preceding gene: 153935454

Following gene: 153936802

Centisome position: 11.65

GC content: 25.98

Gene sequence:

>1305_bases
ATGGAGATACTTTCTTTGGGGGAAAAAATTAAAAGAAGAAGAAAAGAATTAAATATGACATTAAAGGACTTAGCTGGAGA
CAGAATAACTCCAGGGCAGATAAGTCTTGTAGAATCAGGTAAATCAAATCCGAGTATGGATTTATTGGAATATTTGGCAG
AAACATTAAATACATCTATAGAATATTTCATGGAATCTGAAGATACTCAGGCTGAAAAAATATGTAAATATTATGAAAAT
ATAGCAGAATCTCATATTATAAATGATAATTTAAATATAGCAGAACAATATATAGAAAAATCTCTTTATTATGCAGAAAA
ATATAACCTAGAATATAGAAAAGCTAGAAATCTTTATTTAAGAGGACTTATATACATGCATAAGGGAGATCTTCCCGTTG
CTCAGCAATATCTTTTATCGTCAAACGTAATATTTATTAAAAATAATAACTATGAGGAAATAGTTAATACCTTTGTTAAT
TTGGGAAAGATAACAATATTTTTAAAGGCTTATCATTCTTCCTGTAGTTATTTTCAGCAAGCAGAAAAAGTTTATAGCGA
TCATGATATAGGAAATGATGATCTTTTAGCAGAGATATATTATCATATAGCTTATACATATTTTAAGCTAGATAATATAA
ATAAAGCTATAGATTATTCTTATTTAGCAAAGGAAAAATATAGACAACTAAATAATAAAAAAGAATATGCAAACTCTCTT
TTACTATTATCTCAACAATATAGTGAAAAGGGAGAAATGGATAGAGCTATAAAATATTCAGAAAAAGCTTTAAACATATT
TAAAGAAGTAGATGATGTATTATATACCTCTAAAATAGAAAATAATTTAGGTAAGTTATTTTATGAATTTGATAATTTAG
AGGAGTCTTTTATACATTTTAATAGAGCTAAAGAAATAAGGGAGTCTAATAAGGATCCATTACTTTTAGAAACTTTAATA
AATATATGTGAGAATTACATAAAGCAAAAGGATATTCATAATTGTAAACTAATTTTAGATGAAATAATGAACAATTTAGA
AAATGGAAATGAAATAGCTTTAGTAGATTATTATTTATTAAGACATAGAGTAGAACTTCTGCAAGGCGATTTAGAAGAAG
CAGAAAGTACACTTTTAATGGCACTAAACTTTGTTAAGAACATGCAAGATAAGGAAAGAATAGGGGAAATATCCATAATA
ATAGGTAAATTCTATATAGATAATGGAAATGACAAAGAAGCGGCTAAATATTTAAATGAAGGTGTAGAAATGTTCAAGGA
AGTAGGATTATTAAAAGACATGTAA

Upstream 100 bases:

>100_bases
ACTTTTATAAAAAACTTATCCTAATTGAAAAAATATGTTATAATGAGGTTATGAAAACTATAAAAAAAAATTAACTATAT
TAATAGCGAGGAAGATACGT

Downstream 100 bases:

>100_bases
GTAGATTTATTTTGTGGATGGGTGAGATTTTATGGAAATACTTTCTGTAGGGCAAAAAATTAAAAGAGCTAGGGTTTATA
AAGGGTATACCCTAAAAGAA

Product: TPR repeat-containing DNA binding protein

Products: NA

Alternate protein names: Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain Protein; Tetratricopeptide Repeat Protein; Transcriptional Regulator XRE Family; XRE Family Transcriptional Regulator; TPR Repeat-Containing Protein; Ferrous Iron Transport Protein B-Like Protein; Tetratricopeptide Repeat Domain Protein

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MEILSLGEKIKRRRKELNMTLKDLAGDRITPGQISLVESGKSNPSMDLLEYLAETLNTSIEYFMESEDTQAEKICKYYEN
IAESHIINDNLNIAEQYIEKSLYYAEKYNLEYRKARNLYLRGLIYMHKGDLPVAQQYLLSSNVIFIKNNNYEEIVNTFVN
LGKITIFLKAYHSSCSYFQQAEKVYSDHDIGNDDLLAEIYYHIAYTYFKLDNINKAIDYSYLAKEKYRQLNNKKEYANSL
LLLSQQYSEKGEMDRAIKYSEKALNIFKEVDDVLYTSKIENNLGKLFYEFDNLEESFIHFNRAKEIRESNKDPLLLETLI
NICENYIKQKDIHNCKLILDEIMNNLENGNEIALVDYYLLRHRVELLQGDLEEAESTLLMALNFVKNMQDKERIGEISII
IGKFYIDNGNDKEAAKYLNEGVEMFKEVGLLKDM

Sequences:

>Translated_434_residues
MEILSLGEKIKRRRKELNMTLKDLAGDRITPGQISLVESGKSNPSMDLLEYLAETLNTSIEYFMESEDTQAEKICKYYEN
IAESHIINDNLNIAEQYIEKSLYYAEKYNLEYRKARNLYLRGLIYMHKGDLPVAQQYLLSSNVIFIKNNNYEEIVNTFVN
LGKITIFLKAYHSSCSYFQQAEKVYSDHDIGNDDLLAEIYYHIAYTYFKLDNINKAIDYSYLAKEKYRQLNNKKEYANSL
LLLSQQYSEKGEMDRAIKYSEKALNIFKEVDDVLYTSKIENNLGKLFYEFDNLEESFIHFNRAKEIRESNKDPLLLETLI
NICENYIKQKDIHNCKLILDEIMNNLENGNEIALVDYYLLRHRVELLQGDLEEAESTLLMALNFVKNMQDKERIGEISII
IGKFYIDNGNDKEAAKYLNEGVEMFKEVGLLKDM
>Mature_434_residues
MEILSLGEKIKRRRKELNMTLKDLAGDRITPGQISLVESGKSNPSMDLLEYLAETLNTSIEYFMESEDTQAEKICKYYEN
IAESHIINDNLNIAEQYIEKSLYYAEKYNLEYRKARNLYLRGLIYMHKGDLPVAQQYLLSSNVIFIKNNNYEEIVNTFVN
LGKITIFLKAYHSSCSYFQQAEKVYSDHDIGNDDLLAEIYYHIAYTYFKLDNINKAIDYSYLAKEKYRQLNNKKEYANSL
LLLSQQYSEKGEMDRAIKYSEKALNIFKEVDDVLYTSKIENNLGKLFYEFDNLEESFIHFNRAKEIRESNKDPLLLETLI
NICENYIKQKDIHNCKLILDEIMNNLENGNEIALVDYYLLRHRVELLQGDLEEAESTLLMALNFVKNMQDKERIGEISII
IGKFYIDNGNDKEAAKYLNEGVEMFKEVGLLKDM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50872; Mature: 50872

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION ; PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEILSLGEKIKRRRKELNMTLKDLAGDRITPGQISLVESGKSNPSMDLLEYLAETLNTSI
CCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
EYFMESEDTQAEKICKYYENIAESHIINDNLNIAEQYIEKSLYYAEKYNLEYRKARNLYL
HHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
RGLIYMHKGDLPVAQQYLLSSNVIFIKNNNYEEIVNTFVNLGKITIFLKAYHSSCSYFQQ
HHEEEEECCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHEEHHHHHHHHHHHHHH
AEKVYSDHDIGNDDLLAEIYYHIAYTYFKLDNINKAIDYSYLAKEKYRQLNNKKEYANSL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHH
LLLSQQYSEKGEMDRAIKYSEKALNIFKEVDDVLYTSKIENNLGKLFYEFDNLEESFIHF
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRAKEIRESNKDPLLLETLINICENYIKQKDIHNCKLILDEIMNNLENGNEIALVDYYLL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHH
RHRVELLQGDLEEAESTLLMALNFVKNMQDKERIGEISIIIGKFYIDNGNDKEAAKYLNE
HHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEEEEEEECCCCCHHHHHHHHH
GVEMFKEVGLLKDM
HHHHHHHHHHHCCC
>Mature Secondary Structure
MEILSLGEKIKRRRKELNMTLKDLAGDRITPGQISLVESGKSNPSMDLLEYLAETLNTSI
CCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
EYFMESEDTQAEKICKYYENIAESHIINDNLNIAEQYIEKSLYYAEKYNLEYRKARNLYL
HHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
RGLIYMHKGDLPVAQQYLLSSNVIFIKNNNYEEIVNTFVNLGKITIFLKAYHSSCSYFQQ
HHEEEEECCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHEEHHHHHHHHHHHHHH
AEKVYSDHDIGNDDLLAEIYYHIAYTYFKLDNINKAIDYSYLAKEKYRQLNNKKEYANSL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHH
LLLSQQYSEKGEMDRAIKYSEKALNIFKEVDDVLYTSKIENNLGKLFYEFDNLEESFIHF
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRAKEIRESNKDPLLLETLINICENYIKQKDIHNCKLILDEIMNNLENGNEIALVDYYLL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHH
RHRVELLQGDLEEAESTLLMALNFVKNMQDKERIGEISIIIGKFYIDNGNDKEAAKYLNE
HHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEEEEEEECCCCCHHHHHHHHH
GVEMFKEVGLLKDM
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA