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The map label for this gene is 153935656

Identifier: 153935656

GI number: 153935656

Start: 3555511

End: 3556218

Strand: Reverse

Name: 153935656

Synonym: CLC_3384

Alternate gene names: NA

Gene position: 3556218-3555511 (Counterclockwise)

Preceding gene: 153934695

Following gene: 153937384

Centisome position: 94.57

GC content: 24.29

Gene sequence:

>708_bases
ATGAGAAAGGATAATAAATTTAGAAAGGGTTTTTGGAGTAAATTCTCAGTAAAGACTAAATTAAGTATATTTATAGTACT
ATCTATAGTAGCTATATTTAGTGTTTATTATAATAATTTAAGACAATCTCAAAGCAATGATATAAATAAAAACACAGAGA
ATAATACTTCTATAAAATTAGAAAATAAAGATAAAAAAAAGAATAAAGATAGTAAATTTAATAAAGAACTAGAGGAAAAG
TGTGAAAAAGGTAAAAAGCTATTTTTTGATAAAAAATATGATGAAGCTATAAAAGTTCAAAATGAAGTTATAAAAGAAGA
CAGTAATTTTTATAAAGCATATAACATAAAAGGAATAGCATTATGTTATAGTGGAAATTTTGAAGAAGGTATGAAGAATA
TAGATAAATCATTAGATATAAAGCCTGATTATGGATATGCTAGATTTAATAAAGCTTTAGCTTATGAATTATATGAAAGG
TTCGATGAGGCTTTAAAATGGTATGATAAAGCTTTAGATATAGAAAAATATGAATGGAGTTATTATGGTAAAGCAAGCAT
TTATGGAAGAAGAGGGGACGTAAAAAATACAGTTGGATATTTGAAAAAAGCTATAAAAATTTCTCCCGGAGTAAAGGAAG
AAGCTAAAAATGAAGAAGATTTTGAACCAGTAAAAAATTCCGAGGAATTTAAAGCTTTAATAAAATAG

Upstream 100 bases:

>100_bases
TGGATTGGAAGATTATTTGAAAAGTTTATAATAATGTAGAGATTTAAACGCTAATAATATTAAATATTTACTTTTTAAAT
GTAGGATAGAGGGGTATATA

Downstream 100 bases:

>100_bases
TCTGAATTTTTAATAGCTACAGCAAATACTATTTAAAATTTTATTAATATAAAGATATAGTTGAATTTAAGGATAAATAA
AAAGATTTAAAATTTGATTT

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: TPR-Repeat-Containing Protein; Tetratricopeptide Repeat Protein; Tetratricopeptide Repeat Domain Protein; Tetratricopeptide Protein; Tetratricopeptide Repeat Family; TPR Domain Protein; Tetratricopeptide TPR_1 Repeat-Containing Protein; Fog Tpr Repeat; Tetratricopeptide Repeat Containing Protein

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MRKDNKFRKGFWSKFSVKTKLSIFIVLSIVAIFSVYYNNLRQSQSNDINKNTENNTSIKLENKDKKKNKDSKFNKELEEK
CEKGKKLFFDKKYDEAIKVQNEVIKEDSNFYKAYNIKGIALCYSGNFEEGMKNIDKSLDIKPDYGYARFNKALAYELYER
FDEALKWYDKALDIEKYEWSYYGKASIYGRRGDVKNTVGYLKKAIKISPGVKEEAKNEEDFEPVKNSEEFKALIK

Sequences:

>Translated_235_residues
MRKDNKFRKGFWSKFSVKTKLSIFIVLSIVAIFSVYYNNLRQSQSNDINKNTENNTSIKLENKDKKKNKDSKFNKELEEK
CEKGKKLFFDKKYDEAIKVQNEVIKEDSNFYKAYNIKGIALCYSGNFEEGMKNIDKSLDIKPDYGYARFNKALAYELYER
FDEALKWYDKALDIEKYEWSYYGKASIYGRRGDVKNTVGYLKKAIKISPGVKEEAKNEEDFEPVKNSEEFKALIK
>Mature_235_residues
MRKDNKFRKGFWSKFSVKTKLSIFIVLSIVAIFSVYYNNLRQSQSNDINKNTENNTSIKLENKDKKKNKDSKFNKELEEK
CEKGKKLFFDKKYDEAIKVQNEVIKEDSNFYKAYNIKGIALCYSGNFEEGMKNIDKSLDIKPDYGYARFNKALAYELYER
FDEALKWYDKALDIEKYEWSYYGKASIYGRRGDVKNTVGYLKKAIKISPGVKEEAKNEEDFEPVKNSEEFKALIK

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27696; Mature: 27696

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKDNKFRKGFWSKFSVKTKLSIFIVLSIVAIFSVYYNNLRQSQSNDINKNTENNTSIKL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
ENKDKKKNKDSKFNKELEEKCEKGKKLFFDKKYDEAIKVQNEVIKEDSNFYKAYNIKGIA
CCCHHCCCCCHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCCCCEEEEECCCEEE
LCYSGNFEEGMKNIDKSLDIKPDYGYARFNKALAYELYERFDEALKWYDKALDIEKYEWS
EEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
YYGKASIYGRRGDVKNTVGYLKKAIKISPGVKEEAKNEEDFEPVKNSEEFKALIK
CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCHHHHHHCC
>Mature Secondary Structure
MRKDNKFRKGFWSKFSVKTKLSIFIVLSIVAIFSVYYNNLRQSQSNDINKNTENNTSIKL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
ENKDKKKNKDSKFNKELEEKCEKGKKLFFDKKYDEAIKVQNEVIKEDSNFYKAYNIKGIA
CCCHHCCCCCHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCCCCEEEEECCCEEE
LCYSGNFEEGMKNIDKSLDIKPDYGYARFNKALAYELYERFDEALKWYDKALDIEKYEWS
EEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
YYGKASIYGRRGDVKNTVGYLKKAIKISPGVKEEAKNEEDFEPVKNSEEFKALIK
CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA