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The map label for this gene is rhaR [C]

Identifier: 153935592

GI number: 153935592

Start: 352560

End: 353531

Strand: Reverse

Name: rhaR [C]

Synonym: CLC_0364

Alternate gene names: 153935592

Gene position: 353531-352560 (Counterclockwise)

Preceding gene: 153935780

Following gene: 153936809

Centisome position: 9.4

GC content: 26.95

Gene sequence:

>972_bases
ATGAAAATAGATGAAACTATGAAAGTAATTAAAAAATTTGCTTTACAACTTAATTGCAAAGAATATGATTATGGAAATGG
ACACATTCATCGTTTACCTAAGGAAAATGGAGACAGTTGGTTTGTAGAGGTTAACCCTGCTGATGGTCTACTGCTTAGTG
ATGCTTACTTTTCCTTACTGAAGCCAGTGACCTATATTTATAACATTCCAAATAATCATATATTAATATGCTCTTTGTAT
AGTGGTAATATTACTGTTGTGGAGAATGGTAAAAAATCAAAGCGTTTGTATCAAGGTATACATTTCTTTGTTAATAGAGG
GAAAAAAATCAAAATAATTATTAATACAGATGAACCTATATGGTATACTTTTGCTTTAGTATTTGAAGTCTTTATCTTAA
AATATATAAAAGATTTTTTATCTCAAGCTTCATATATCTTATCAAAGGATATTTTATTAAAGCCAAATTATTTTAATACA
CCAGAATTACTTATGATATTTGAACAATTAAAATATACAATTAGAAGTTGTGATCTTCCACACATGTATTATATAGGTAA
AATATACGAAATTTTTGCTATTATTATACGTAATTTAGAAAATGAAAAGTATTTAAATATACCTCGCCATAATCATTTGA
GTTACCAAAATAAACAATTTATGTGGACTTTAAAGGAAGAAATAGATAAAAATATATTAAATCCCCCTACAATCGAAGAA
ATGAAAAATATAGCTGAAATGAGCGAATCTAAACTTAGACGATGCTTTAAAGCAACCTATGGAAAAACAATTTATGAATA
TATTAGATATAAAAAGATGGAACAAGCAATTAGATTTCTATCCCATGATGAGATGAGTATACATAATATTTCTACTACCT
TAGGTTATGAAAGCCCAAGTAAGTTTTCAGCAGCATTTAAAAAAGTTTATGGTATTACCCCTAGTGCATTTAGAAAATCC
TTTAATCTGTAA

Upstream 100 bases:

>100_bases
ATTTATATTTACAGTTTTAAAATTAAAACTATTTTGGAATATCCTCAAATAAATATATATGAAAAATAATTTAATTTTAA
AAAGGAAAGGATTTAAATCC

Downstream 100 bases:

>100_bases
TTATGATTGAAAGCTAAAGCCTTATTGTCAGTTCCTAATTCTCACTATTAAACTAATCTAAGACTTTCACCAATAAGCTA
AGTTATTGCCAGTACTGAGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Two Component AraC Family Transcriptional Regulator; Transcriptional Regulatory Protein; AraC Family Transcription Regulator; Transcriptional Regulator AraC/YbtA; Regulatory Protein PcrR; AraC Family Regulatory Protein; Regulatory Helix-Turn-Helix Protein AraC Family; Regulatory Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator AraC Family Protein; Two-Component Regulatory System Response Regulator Protein

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MKIDETMKVIKKFALQLNCKEYDYGNGHIHRLPKENGDSWFVEVNPADGLLLSDAYFSLLKPVTYIYNIPNNHILICSLY
SGNITVVENGKKSKRLYQGIHFFVNRGKKIKIIINTDEPIWYTFALVFEVFILKYIKDFLSQASYILSKDILLKPNYFNT
PELLMIFEQLKYTIRSCDLPHMYYIGKIYEIFAIIIRNLENEKYLNIPRHNHLSYQNKQFMWTLKEEIDKNILNPPTIEE
MKNIAEMSESKLRRCFKATYGKTIYEYIRYKKMEQAIRFLSHDEMSIHNISTTLGYESPSKFSAAFKKVYGITPSAFRKS
FNL

Sequences:

>Translated_323_residues
MKIDETMKVIKKFALQLNCKEYDYGNGHIHRLPKENGDSWFVEVNPADGLLLSDAYFSLLKPVTYIYNIPNNHILICSLY
SGNITVVENGKKSKRLYQGIHFFVNRGKKIKIIINTDEPIWYTFALVFEVFILKYIKDFLSQASYILSKDILLKPNYFNT
PELLMIFEQLKYTIRSCDLPHMYYIGKIYEIFAIIIRNLENEKYLNIPRHNHLSYQNKQFMWTLKEEIDKNILNPPTIEE
MKNIAEMSESKLRRCFKATYGKTIYEYIRYKKMEQAIRFLSHDEMSIHNISTTLGYESPSKFSAAFKKVYGITPSAFRKS
FNL
>Mature_323_residues
MKIDETMKVIKKFALQLNCKEYDYGNGHIHRLPKENGDSWFVEVNPADGLLLSDAYFSLLKPVTYIYNIPNNHILICSLY
SGNITVVENGKKSKRLYQGIHFFVNRGKKIKIIINTDEPIWYTFALVFEVFILKYIKDFLSQASYILSKDILLKPNYFNT
PELLMIFEQLKYTIRSCDLPHMYYIGKIYEIFAIIIRNLENEKYLNIPRHNHLSYQNKQFMWTLKEEIDKNILNPPTIEE
MKNIAEMSESKLRRCFKATYGKTIYEYIRYKKMEQAIRFLSHDEMSIHNISTTLGYESPSKFSAAFKKVYGITPSAFRKS
FNL

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38147; Mature: 38147

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIDETMKVIKKFALQLNCKEYDYGNGHIHRLPKENGDSWFVEVNPADGLLLSDAYFSLL
CCHHHHHHHHHHHHHHCCCCEECCCCCCEEECCCCCCCEEEEEECCCCCEEEHHHHHHHH
KPVTYIYNIPNNHILICSLYSGNITVVENGKKSKRLYQGIHFFVNRGKKIKIIINTDEPI
HHHHHEEECCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCH
WYTFALVFEVFILKYIKDFLSQASYILSKDILLKPNYFNTPELLMIFEQLKYTIRSCDLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
HMYYIGKIYEIFAIIIRNLENEKYLNIPRHNHLSYQNKQFMWTLKEEIDKNILNPPTIEE
HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHEEHHHHHHHHCCCCCCCHHH
MKNIAEMSESKLRRCFKATYGKTIYEYIRYKKMEQAIRFLSHDEMSIHNISTTLGYESPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCH
KFSAAFKKVYGITPSAFRKSFNL
HHHHHHHHHHCCCHHHHHHCCCC
>Mature Secondary Structure
MKIDETMKVIKKFALQLNCKEYDYGNGHIHRLPKENGDSWFVEVNPADGLLLSDAYFSLL
CCHHHHHHHHHHHHHHCCCCEECCCCCCEEECCCCCCCEEEEEECCCCCEEEHHHHHHHH
KPVTYIYNIPNNHILICSLYSGNITVVENGKKSKRLYQGIHFFVNRGKKIKIIINTDEPI
HHHHHEEECCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCH
WYTFALVFEVFILKYIKDFLSQASYILSKDILLKPNYFNTPELLMIFEQLKYTIRSCDLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
HMYYIGKIYEIFAIIIRNLENEKYLNIPRHNHLSYQNKQFMWTLKEEIDKNILNPPTIEE
HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHEEHHHHHHHHCCCCCCCHHH
MKNIAEMSESKLRRCFKATYGKTIYEYIRYKKMEQAIRFLSHDEMSIHNISTTLGYESPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCH
KFSAAFKKVYGITPSAFRKSFNL
HHHHHHHHHHCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA