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The map label for this gene is ydeF [H]

Identifier: 153934846

GI number: 153934846

Start: 2101239

End: 2102633

Strand: Reverse

Name: ydeF [H]

Synonym: CLC_1980

Alternate gene names: 153934846

Gene position: 2102633-2101239 (Counterclockwise)

Preceding gene: 153934795

Following gene: 153936360

Centisome position: 55.91

GC content: 32.69

Gene sequence:

>1395_bases
ATGCCTGTAAATTCATTTGAAAATTATCCAATGGCATGGAAACCTGATAAAGGACAATTAGGTTCTCCATTATATCTTTC
TATTGCTAGTTTATTAGAATATGATATACTTAACGGCTATCTTGCACCTAACACAAAACTTCCACCTCAAAGAGAACTGG
CAGACTACCTTGATATTAATTTAAGTACTATAACAAGAGCCTTTAAAATCTGTGAAGCAAAAGGATTAATTTATGCTGCT
ATTGGAAGTGGAACCTTTGTTTCTCCTAATGCTGGGAGTGCTATTTCTCTAGCGGACAACGATGCAAATAAGAACTATAT
AGAGATGGGTGTTATAAAACCACTGGATTTCTCTAATATATTAGTTTCAGAAACTATTAAAAGCATTGCCAATAAAAATT
ATCTGGAAAAGCTATTGGATTACAGACATCCTTTAGGATGCCCTTATCACAGAATGGCTGCAAAAAAATGGATGCAGCGC
TTTTCTATGGACGTATCTATTGAAAATATAGCTATAACATCAGGAGGGCAAAATGCTATTACACTGCTCTTAATCTCTAT
TTTTAATCCTGGTGATAAAATTGCAGTGGACACTTATACTTATCCTAATTTTATTGAATTAGCTAATATGTTGAATATTC
AATTAATACCTATTGAAGCAGATGAATTAGGAATTATACCAGAACGATTAGATCTTGCCTGTAATATAAATCATATAAAA
GGAATATACATAAATCCTTCCTGTAGTAATCCCACTGCTGTAATTATGGATATGAAGCGCAGAAAGGAAATCGCAGATGT
GATAAAGAAGCATAAGCTTATTCTAATGGAAGATGATATTTATTCTTTTCTTGCTCCACAAGGTTATTTACCAATATCAC
ATTTTGTTCCAGAACAGTTTATTTATATACTAAGTATATCAAAAGCCTTAAGTTCTGGCATGAGAGTGGGATTTATGGGT
TACGCAAATCAGTTTGTTGAAAAAATTAATAGAGGTATTTACAATATAAATATAAAAACTTCCTCACTAAATGCAGAGAT
CATAACTGAACTGATTAACACTGGAATTGCTGATAAAATTATTAGGCAGAAAAAAGAAATTGCTGAAGAACGCAATGAAA
TATATGAACAATATTTTGAAATTACAAATCCTCATGAAAATCCCCTAAGCTTTTTTCGGTGGCTTCCACTGTGTCAAAAG
TATCAAGGAAAGCAATTTGAACAGGATGCTTTAAAACATGGTATTCGTGTATACCATTCCTATCGATTCTTAACTGGAAA
AGATGAATCAGCGCAATTTATTCGCATTTCACTAACCTCTGTGACAGACTCTCAAGAATTAGATAAGGGACTTCGAATGC
TTAATGATTTTTTACTCCAGGCAAAAGAAAGTTGA

Upstream 100 bases:

>100_bases
TTTTAGGTGAAATCATACTATGATAGTAAGTATATCATTGTAAGTGTATGGTCTCAATGATATAATTGTATGCAAGACAA
TTATTTTAAGGAGGTTCCAT

Downstream 100 bases:

>100_bases
TAAAGAAGTTAATGGAATAATCTTTTTTATATTATTTTTAAGATTATATTGACATTATTGTAACGCCATGATATCATAAC
ATAAACTTACCAAGAGGGGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MPVNSFENYPMAWKPDKGQLGSPLYLSIASLLEYDILNGYLAPNTKLPPQRELADYLDINLSTITRAFKICEAKGLIYAA
IGSGTFVSPNAGSAISLADNDANKNYIEMGVIKPLDFSNILVSETIKSIANKNYLEKLLDYRHPLGCPYHRMAAKKWMQR
FSMDVSIENIAITSGGQNAITLLLISIFNPGDKIAVDTYTYPNFIELANMLNIQLIPIEADELGIIPERLDLACNINHIK
GIYINPSCSNPTAVIMDMKRRKEIADVIKKHKLILMEDDIYSFLAPQGYLPISHFVPEQFIYILSISKALSSGMRVGFMG
YANQFVEKINRGIYNINIKTSSLNAEIITELINTGIADKIIRQKKEIAEERNEIYEQYFEITNPHENPLSFFRWLPLCQK
YQGKQFEQDALKHGIRVYHSYRFLTGKDESAQFIRISLTSVTDSQELDKGLRMLNDFLLQAKES

Sequences:

>Translated_464_residues
MPVNSFENYPMAWKPDKGQLGSPLYLSIASLLEYDILNGYLAPNTKLPPQRELADYLDINLSTITRAFKICEAKGLIYAA
IGSGTFVSPNAGSAISLADNDANKNYIEMGVIKPLDFSNILVSETIKSIANKNYLEKLLDYRHPLGCPYHRMAAKKWMQR
FSMDVSIENIAITSGGQNAITLLLISIFNPGDKIAVDTYTYPNFIELANMLNIQLIPIEADELGIIPERLDLACNINHIK
GIYINPSCSNPTAVIMDMKRRKEIADVIKKHKLILMEDDIYSFLAPQGYLPISHFVPEQFIYILSISKALSSGMRVGFMG
YANQFVEKINRGIYNINIKTSSLNAEIITELINTGIADKIIRQKKEIAEERNEIYEQYFEITNPHENPLSFFRWLPLCQK
YQGKQFEQDALKHGIRVYHSYRFLTGKDESAQFIRISLTSVTDSQELDKGLRMLNDFLLQAKES
>Mature_463_residues
PVNSFENYPMAWKPDKGQLGSPLYLSIASLLEYDILNGYLAPNTKLPPQRELADYLDINLSTITRAFKICEAKGLIYAAI
GSGTFVSPNAGSAISLADNDANKNYIEMGVIKPLDFSNILVSETIKSIANKNYLEKLLDYRHPLGCPYHRMAAKKWMQRF
SMDVSIENIAITSGGQNAITLLLISIFNPGDKIAVDTYTYPNFIELANMLNIQLIPIEADELGIIPERLDLACNINHIKG
IYINPSCSNPTAVIMDMKRRKEIADVIKKHKLILMEDDIYSFLAPQGYLPISHFVPEQFIYILSISKALSSGMRVGFMGY
ANQFVEKINRGIYNINIKTSSLNAEIITELINTGIADKIIRQKKEIAEERNEIYEQYFEITNPHENPLSFFRWLPLCQKY
QGKQFEQDALKHGIRVYHSYRFLTGKDESAQFIRISLTSVTDSQELDKGLRMLNDFLLQAKES

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=319, Percent_Identity=24.4514106583072, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI33469970, Length=319, Percent_Identity=24.4514106583072, Blast_Score=90, Evalue=4e-18,
Organism=Escherichia coli, GI1790797, Length=409, Percent_Identity=25.4278728606357, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787710, Length=446, Percent_Identity=22.4215246636771, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52595; Mature: 52464

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVNSFENYPMAWKPDKGQLGSPLYLSIASLLEYDILNGYLAPNTKLPPQRELADYLDIN
CCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHCCC
LSTITRAFKICEAKGLIYAAIGSGTFVSPNAGSAISLADNDANKNYIEMGVIKPLDFSNI
HHHHHHHHHHHHHCCEEEEEECCCEEECCCCCCEEEECCCCCCCCEEEECCCCCCCHHHH
LVSETIKSIANKNYLEKLLDYRHPLGCPYHRMAAKKWMQRFSMDVSIENIAITSGGQNAI
HHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEE
TLLLISIFNPGDKIAVDTYTYPNFIELANMLNIQLIPIEADELGIIPERLDLACNINHIK
EEEEEEHCCCCCCEEEEECCCCCHHHHHHHHEEEEEEECCCCCCCCHHHHCEEEECCEEE
GIYINPSCSNPTAVIMDMKRRKEIADVIKKHKLILMEDDIYSFLAPQGYLPISHFVPEQF
EEEECCCCCCCCEEEHHHHHHHHHHHHHHHCCEEEEECCHHHHHCCCCCCCHHHHCHHHH
IYILSISKALSSGMRVGFMGYANQFVEKINRGIYNINIKTSSLNAEIITELINTGIADKI
HHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHCCHHHHH
IRQKKEIAEERNEIYEQYFEITNPHENPLSFFRWLPLCQKYQGKQFEQDALKHGIRVYHS
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHE
YRFLTGKDESAQFIRISLTSVTDSQELDKGLRMLNDFLLQAKES
EEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PVNSFENYPMAWKPDKGQLGSPLYLSIASLLEYDILNGYLAPNTKLPPQRELADYLDIN
CCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHCCC
LSTITRAFKICEAKGLIYAAIGSGTFVSPNAGSAISLADNDANKNYIEMGVIKPLDFSNI
HHHHHHHHHHHHHCCEEEEEECCCEEECCCCCCEEEECCCCCCCCEEEECCCCCCCHHHH
LVSETIKSIANKNYLEKLLDYRHPLGCPYHRMAAKKWMQRFSMDVSIENIAITSGGQNAI
HHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEE
TLLLISIFNPGDKIAVDTYTYPNFIELANMLNIQLIPIEADELGIIPERLDLACNINHIK
EEEEEEHCCCCCCEEEEECCCCCHHHHHHHHEEEEEEECCCCCCCCHHHHCEEEECCEEE
GIYINPSCSNPTAVIMDMKRRKEIADVIKKHKLILMEDDIYSFLAPQGYLPISHFVPEQF
EEEECCCCCCCCEEEHHHHHHHHHHHHHHHCCEEEEECCHHHHHCCCCCCCHHHHCHHHH
IYILSISKALSSGMRVGFMGYANQFVEKINRGIYNINIKTSSLNAEIITELINTGIADKI
HHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHCCHHHHH
IRQKKEIAEERNEIYEQYFEITNPHENPLSFFRWLPLCQKYQGKQFEQDALKHGIRVYHS
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHE
YRFLTGKDESAQFIRISLTSVTDSQELDKGLRMLNDFLLQAKES
EEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]