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The map label for this gene is lyc [H]

Identifier: 153932341

GI number: 153932341

Start: 3108086

End: 3108790

Strand: Reverse

Name: lyc [H]

Synonym: CLB_2952

Alternate gene names: 153932341

Gene position: 3108790-3108086 (Counterclockwise)

Preceding gene: 153932615

Following gene: 153931755

Centisome position: 80.47

GC content: 31.91

Gene sequence:

>705_bases
ATGGCTAAAGGAATAGATATAAGTATGCATAATGGTACAGTAAATTTCAGTGCTGTAAAGTCTAGTGGTTGTAATATAGT
AATTATAAAAGCTACTGAGGGAGTAAATTATGTAGATCCTTGCTTAAATCAACACTATAATGGAGCAAAAGCACAAGGAT
TAAACATTGGTTTCTATCACTTCATGTCGGAGAAAACAAACCCTACTCAACAAGCTATAGATTTTTGGAATGCTATAAAA
GGAAAACAGTTTAATATAATACCTACTTTAGATATAGAAACTAATAACATGGGTAGAAGTCAAAAACAAATATCGGATAG
ATGTATAGAATTTTTAACTAAATTCAAGGCTTTAAGTGGCTATAACTGTTTAATATATACAGGAGGTTACTTTGGACGTG
ATAATTTAGACAGCAGAATTAAAAGCTATCCTGGTTGGATAGCACATTACGGTGTTGATAAACCTATGCAAACAGGATTT
CCAGTTGTCGGACACCAATATACCGAAACCGGTAGAGTTAATGGGGTAAGTGGCAATGTAGATTTAAATAATTTTACAGA
TAAAATATTTATAAATAAAAAGGAGAAAAAGAAAGTGAAAAATTTAGTAGTATACAATAACATATGTGACCAGAGGGCTG
CTGAGTATCTAGCAGATAAATTAAACTGTCCAACTATATGGGGAGCGAGACCTTTTGATTATTAA

Upstream 100 bases:

>100_bases
ATAGGATTTTATTTTGGTCAGTCTAGTGCTAGACAGGCTATTAAAGAGCAGGGCGAATAGTTCTGTTCTTTTTTAATAGT
AAAAATATAGGAGGTATAAG

Downstream 100 bases:

>100_bases
AGCGACACAAATAAATATTTTATAAGGGCAAAGTAGACACCACATAGGTGTTTTTATTTTGCCTATTTTTATAGAAGGAA
GGTTAAAAAATGAAATGGGA

Product: glycosy hydrolase family protein

Products: NA

Alternate protein names: 1,4-beta-N-acetylmuramidase; Autolysin [H]

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MAKGIDISMHNGTVNFSAVKSSGCNIVIIKATEGVNYVDPCLNQHYNGAKAQGLNIGFYHFMSEKTNPTQQAIDFWNAIK
GKQFNIIPTLDIETNNMGRSQKQISDRCIEFLTKFKALSGYNCLIYTGGYFGRDNLDSRIKSYPGWIAHYGVDKPMQTGF
PVVGHQYTETGRVNGVSGNVDLNNFTDKIFINKKEKKKVKNLVVYNNICDQRAAEYLADKLNCPTIWGARPFDY

Sequences:

>Translated_234_residues
MAKGIDISMHNGTVNFSAVKSSGCNIVIIKATEGVNYVDPCLNQHYNGAKAQGLNIGFYHFMSEKTNPTQQAIDFWNAIK
GKQFNIIPTLDIETNNMGRSQKQISDRCIEFLTKFKALSGYNCLIYTGGYFGRDNLDSRIKSYPGWIAHYGVDKPMQTGF
PVVGHQYTETGRVNGVSGNVDLNNFTDKIFINKKEKKKVKNLVVYNNICDQRAAEYLADKLNCPTIWGARPFDY
>Mature_233_residues
AKGIDISMHNGTVNFSAVKSSGCNIVIIKATEGVNYVDPCLNQHYNGAKAQGLNIGFYHFMSEKTNPTQQAIDFWNAIKG
KQFNIIPTLDIETNNMGRSQKQISDRCIEFLTKFKALSGYNCLIYTGGYFGRDNLDSRIKSYPGWIAHYGVDKPMQTGFP
VVGHQYTETGRVNGVSGNVDLNNFTDKIFINKKEKKKVKNLVVYNNICDQRAAEYLADKLNCPTIWGARPFDY

Specific function: Unknown

COG id: COG3757

COG function: function code M; Lyzozyme M1 (1,4-beta-N-acetylmuramidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 25 family [H]

Homologues:

Organism=Escherichia coli, GI87082043, Length=187, Percent_Identity=29.9465240641711, Blast_Score=93, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002053
- InterPro:   IPR008270
- InterPro:   IPR017853
- InterPro:   IPR018077
- InterPro:   IPR013781
- InterPro:   IPR003646
- InterPro:   IPR013247 [H]

Pfam domain/function: PF01183 Glyco_hydro_25; PF08239 SH3_3 [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 26291; Mature: 26160

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS00953 GLYCOSYL_HYDROL_F25

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKGIDISMHNGTVNFSAVKSSGCNIVIIKATEGVNYVDPCLNQHYNGAKAQGLNIGFYH
CCCCEEEEECCCEEEEEEEECCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEE
FMSEKTNPTQQAIDFWNAIKGKQFNIIPTLDIETNNMGRSQKQISDRCIEFLTKFKALSG
EECCCCCHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
YNCLIYTGGYFGRDNLDSRIKSYPGWIAHYGVDKPMQTGFPVVGHQYTETGRVNGVSGNV
CEEEEEECCCCCCCCHHHHHHHCCCEEEECCCCCCHHCCCCCCCCEECCCCCCCCCCCCC
DLNNFTDKIFINKKEKKKVKNLVVYNNICDQRAAEYLADKLNCPTIWGARPFDY
CCCCCCCEEEECCHHHHHHHHEEEEHHHHHHHHHHHHHHHCCCCEECCCCCCCC
>Mature Secondary Structure 
AKGIDISMHNGTVNFSAVKSSGCNIVIIKATEGVNYVDPCLNQHYNGAKAQGLNIGFYH
CCCEEEEECCCEEEEEEEECCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEE
FMSEKTNPTQQAIDFWNAIKGKQFNIIPTLDIETNNMGRSQKQISDRCIEFLTKFKALSG
EECCCCCHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
YNCLIYTGGYFGRDNLDSRIKSYPGWIAHYGVDKPMQTGFPVVGHQYTETGRVNGVSGNV
CEEEEEECCCCCCCCHHHHHHHCCCEEEECCCCCCHHCCCCCCCCEECCCCCCCCCCCCC
DLNNFTDKIFINKKEKKKVKNLVVYNNICDQRAAEYLADKLNCPTIWGARPFDY
CCCCCCCEEEECCHHHHHHHHEEEEHHHHHHHHHHHHHHHCCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792842; 8177218 [H]