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The map label for this gene is 153931755

Identifier: 153931755

GI number: 153931755

Start: 3107580

End: 3107996

Strand: Reverse

Name: 153931755

Synonym: CLB_2951

Alternate gene names: NA

Gene position: 3107996-3107580 (Counterclockwise)

Preceding gene: 153932341

Following gene: 153930977

Centisome position: 80.45

GC content: 31.89

Gene sequence:

>417_bases
ATGAAATGGGATAAAATATTAAGTACAATTATAGCAGGATTAGGAGCTTGTGCAAATTATTTCTTTGGAGGATTAGATAT
GGCATTAAAGACATTATTACTACTTATGGTCCTAGATTATATAAGTGGATTAATTTGCGCAGGCAAAGACAAAAGTTTAA
GTTCCAGTGCAGGATTTAAGGGGTTGGCTAAAAAAATAATAATACTTATAATTGTTGGGGTTGGTGTATCTGTAGATAAT
GTTACAGGAGCAAATGGAATAGTTAGGAGTATGGTTATATTTTTCTATGCAAGTATGGAAGGAATAAGTATATTAGAAAA
TGCAACTAGAGCAGGTGTGCCTGTACCAGATGGATTAAAAAATATGCTAATACAACTTAAAGAAGGAAATAAGAAGGAAA
TCAAAGAGCAGGAATAA

Upstream 100 bases:

>100_bases
TTGATTATTAAAGCGACACAAATAAATATTTTATAAGGGCAAAGTAGACACCACATAGGTGTTTTTATTTTGCCTATTTT
TATAGAAGGAAGGTTAAAAA

Downstream 100 bases:

>100_bases
ACCTGTTCTTTTTTTTAATTAAATTTATAGGAGGTAATTTTAATATGTTATTTAATTTGAATCCAGGACATACATTAAGT
GGTGGAGATGTAGGAACTAG

Product: toxin secretion/phage lysis holin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MKWDKILSTIIAGLGACANYFFGGLDMALKTLLLLMVLDYISGLICAGKDKSLSSSAGFKGLAKKIIILIIVGVGVSVDN
VTGANGIVRSMVIFFYASMEGISILENATRAGVPVPDGLKNMLIQLKEGNKKEIKEQE

Sequences:

>Translated_138_residues
MKWDKILSTIIAGLGACANYFFGGLDMALKTLLLLMVLDYISGLICAGKDKSLSSSAGFKGLAKKIIILIIVGVGVSVDN
VTGANGIVRSMVIFFYASMEGISILENATRAGVPVPDGLKNMLIQLKEGNKKEIKEQE
>Mature_138_residues
MKWDKILSTIIAGLGACANYFFGGLDMALKTLLLLMVLDYISGLICAGKDKSLSSSAGFKGLAKKIIILIIVGVGVSVDN
VTGANGIVRSMVIFFYASMEGISILENATRAGVPVPDGLKNMLIQLKEGNKKEIKEQE

Specific function: Unknown

COG id: COG4824

COG function: function code R; Phage-related holin (Lysis protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cp-1 holin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006480 [H]

Pfam domain/function: PF05105 Phage_holin_4 [H]

EC number: NA

Molecular weight: Translated: 14698; Mature: 14698

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWDKILSTIIAGLGACANYFFGGLDMALKTLLLLMVLDYISGLICAGKDKSLSSSAGFK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHH
GLAKKIIILIIVGVGVSVDNVTGANGIVRSMVIFFYASMEGISILENATRAGVPVPDGLK
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHH
NMLIQLKEGNKKEIKEQE
HHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKWDKILSTIIAGLGACANYFFGGLDMALKTLLLLMVLDYISGLICAGKDKSLSSSAGFK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHH
GLAKKIIILIIVGVGVSVDNVTGANGIVRSMVIFFYASMEGISILENATRAGVPVPDGLK
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHH
NMLIQLKEGNKKEIKEQE
HHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]