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The map label for this gene is lytT [H]

Identifier: 152977592

GI number: 152977592

Start: 3983708

End: 3984424

Strand: Reverse

Name: lytT [H]

Synonym: Bcer98_3930

Alternate gene names: 152977592

Gene position: 3984424-3983708 (Counterclockwise)

Preceding gene: 152977595

Following gene: 152977591

Centisome position: 97.49

GC content: 31.94

Gene sequence:

>717_bases
ATGAAAATTTTATTTATTACGGACGAGGTAGAAAGACGAAATAGATTAATTGAATTATTTACAGAAAATATACGAAATGT
AGAATGTCTAGAAGCAATCACTGGAACGGAGTCTTTACATATCGCAAAGAAGCATGCTCCAGATTTCGTCTTTTTAGATA
CGCAGCTAAAAGACGGAACAGGATTTGAGTTTTCCAACTTGTTGCGAGAGCAAAATTGCAATATGAAATTTATATTTATA
GGGGAGAATGTTGAGGAGGCTGTTATGGCTTTTCGTTTTCGAGCATTTTATTATTTGCTGCGACCATTTCATCAGGATGA
TGTATTATTTTTAGCGCACAGAATGGAGCAAGAAATTGGAACGAAAACGAGAAGTTACTTACGGAAGCTTCCAATTGAAA
GTCAGGAAGGGATTACGTACATTTTTCCCGAGGATATCGTATATGTAAGCAAGAATAAAGAAAATAAAACAGTGTCTATT
TATACAACAAATAATCATTATATTTCAACGTATACACTTCAAGAGTTAGAAAATAAATTGGCTACATATGATTTTTTACG
CGTTCATAAGAGTTATTTAATTAATGTTATATATGTAAGGAAACTAAAACCTTATTATAATGGAACGTATAATCTTTATT
TGGAAAAGTATGATGAGCAGTCGATTCCTGTTAGTCGAAACTATGTAAAACAACTTCGGAATAGAATTGAATTGTAA

Upstream 100 bases:

>100_bases
CATGATCAGTAGAAAATAAAGTTTAAAAAAGGGTTTATTTCCAATGAAAGCGAATGTATAAAACAAGACACATGGATCAA
ACAATTAGGTGGTTGGGCAA

Downstream 100 bases:

>100_bases
CAAGTTGTGAGAGAATATGAACATGATAACATAAGAATCCTTCATGATAAGGAGGATTCAAATTAAATATTCAGAAAATT
TAGTACAATCTCCACTAAGA

Product: LytTR family two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MKILFITDEVERRNRLIELFTENIRNVECLEAITGTESLHIAKKHAPDFVFLDTQLKDGTGFEFSNLLREQNCNMKFIFI
GENVEEAVMAFRFRAFYYLLRPFHQDDVLFLAHRMEQEIGTKTRSYLRKLPIESQEGITYIFPEDIVYVSKNKENKTVSI
YTTNNHYISTYTLQELENKLATYDFLRVHKSYLINVIYVRKLKPYYNGTYNLYLEKYDEQSIPVSRNYVKQLRNRIEL

Sequences:

>Translated_238_residues
MKILFITDEVERRNRLIELFTENIRNVECLEAITGTESLHIAKKHAPDFVFLDTQLKDGTGFEFSNLLREQNCNMKFIFI
GENVEEAVMAFRFRAFYYLLRPFHQDDVLFLAHRMEQEIGTKTRSYLRKLPIESQEGITYIFPEDIVYVSKNKENKTVSI
YTTNNHYISTYTLQELENKLATYDFLRVHKSYLINVIYVRKLKPYYNGTYNLYLEKYDEQSIPVSRNYVKQLRNRIEL
>Mature_238_residues
MKILFITDEVERRNRLIELFTENIRNVECLEAITGTESLHIAKKHAPDFVFLDTQLKDGTGFEFSNLLREQNCNMKFIFI
GENVEEAVMAFRFRAFYYLLRPFHQDDVLFLAHRMEQEIGTKTRSYLRKLPIESQEGITYIFPEDIVYVSKNKENKTVSI
YTTNNHYISTYTLQELENKLATYDFLRVHKSYLINVIYVRKLKPYYNGTYNLYLEKYDEQSIPVSRNYVKQLRNRIEL

Specific function: Member of the two-component regulatory system lytS/lytT that probably regulates genes involved in cell wall metabolism [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=247, Percent_Identity=25.5060728744939, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87082052, Length=249, Percent_Identity=26.5060240963855, Blast_Score=78, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28480; Mature: 28480

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILFITDEVERRNRLIELFTENIRNVECLEAITGTESLHIAKKHAPDFVFLDTQLKDGT
CEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEHHHCCCCEEEEEEEECCCC
GFEFSNLLREQNCNMKFIFIGENVEEAVMAFRFRAFYYLLRPFHQDDVLFLAHRMEQEIG
CCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
TKTRSYLRKLPIESQEGITYIFPEDIVYVSKNKENKTVSIYTTNNHYISTYTLQELENKL
HHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCCCEEEEEECCCEEEEEEEHHHHHHHH
ATYDFLRVHKSYLINVIYVRKLKPYYNGTYNLYLEKYDEQSIPVSRNYVKQLRNRIEL
HHHHHHHHHHHHHHEEEEEEEECHHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MKILFITDEVERRNRLIELFTENIRNVECLEAITGTESLHIAKKHAPDFVFLDTQLKDGT
CEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEHHHCCCCEEEEEEEECCCC
GFEFSNLLREQNCNMKFIFIGENVEEAVMAFRFRAFYYLLRPFHQDDVLFLAHRMEQEIG
CCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
TKTRSYLRKLPIESQEGITYIFPEDIVYVSKNKENKTVSIYTTNNHYISTYTLQELENKL
HHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCCCEEEEEECCCEEEEEEEHHHHHHHH
ATYDFLRVHKSYLINVIYVRKLKPYYNGTYNLYLEKYDEQSIPVSRNYVKQLRNRIEL
HHHHHHHHHHHHHHEEEEEEEECHHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]