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The map label for this gene is lldR [H]

Identifier: 152976983

GI number: 152976983

Start: 3356623

End: 3357240

Strand: Reverse

Name: lldR [H]

Synonym: Bcer98_3286

Alternate gene names: 152976983

Gene position: 3357240-3356623 (Counterclockwise)

Preceding gene: 152976984

Following gene: 152976982

Centisome position: 82.14

GC content: 35.92

Gene sequence:

>618_bases
TTGACATCATCAAATACAAAAGTATACCTCGAAATTGTAAAGAAAATTCGCTCCATTATGGAGGAGGATGGTTTAGTTGC
AGGTGACCGTTTGCCGTCAGAGCGTGAGTTAAGTGCACGTTTGAATGTTGGGCGTTCGTCTGTACGAGAAGCATTGCGTG
CTTTAGAACTGGTAGGATTAATTGAAACAAGGCGCGGTGAAGGGACGTTTATTCGTAACTTCTATGAAAATGGTCTCGTT
CAATTGATTGCACCATTTTTATTGCAAGATGAAAAAACTAGACAGGATTTATTACAAACGAAACGATTAATTGAAAAAGA
TATGATTCGGATTGTCTGTAATTTAGCAGATGATACATTCTCTACGGTGTTAAGTAATTTAAAACAGGCGCTTGAGAGAC
AGGAAAGTTCAATTCAAGCGTTTCATCAAACGTTTTTCAAAACACTTATTGAACAAGTGGATAACTATTTACTATATCGC
ATTTGGATGATTGTAAATGATTATGTGGCAACCCTTTCTTGTAAAGTGTTAATAGACTCTATAGAGGTATATAGAAAACT
TTACAAAGCTTTGGAAGCAAAACAGGAAGAAGAGACACTGAACATTTATGATGAATAG

Upstream 100 bases:

>100_bases
TGGAGACAGGGGTAGCTCGTCGCCAAGTAGATCCAAATGAAGTTGCTGAGAAAACAAAACGATTAGCGTTGATTGGTAAC
GAATAAGCGAGGAGTTTTAA

Downstream 100 bases:

>100_bases
ATAGAGAAAATACAGTTTCACTCGTAATGTATAAAATTTGTCGAAATGACCATGACACGTTATGACAAACAATCTACTGC
ATAGCGGTTAAAGTTAAACG

Product: regulatory protein GntR HTH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MTSSNTKVYLEIVKKIRSIMEEDGLVAGDRLPSERELSARLNVGRSSVREALRALELVGLIETRRGEGTFIRNFYENGLV
QLIAPFLLQDEKTRQDLLQTKRLIEKDMIRIVCNLADDTFSTVLSNLKQALERQESSIQAFHQTFFKTLIEQVDNYLLYR
IWMIVNDYVATLSCKVLIDSIEVYRKLYKALEAKQEEETLNIYDE

Sequences:

>Translated_205_residues
MTSSNTKVYLEIVKKIRSIMEEDGLVAGDRLPSERELSARLNVGRSSVREALRALELVGLIETRRGEGTFIRNFYENGLV
QLIAPFLLQDEKTRQDLLQTKRLIEKDMIRIVCNLADDTFSTVLSNLKQALERQESSIQAFHQTFFKTLIEQVDNYLLYR
IWMIVNDYVATLSCKVLIDSIEVYRKLYKALEAKQEEETLNIYDE
>Mature_204_residues
TSSNTKVYLEIVKKIRSIMEEDGLVAGDRLPSERELSARLNVGRSSVREALRALELVGLIETRRGEGTFIRNFYENGLVQ
LIAPFLLQDEKTRQDLLQTKRLIEKDMIRIVCNLADDTFSTVLSNLKQALERQESSIQAFHQTFFKTLIEQVDNYLLYRI
WMIVNDYVATLSCKVLIDSIEVYRKLYKALEAKQEEETLNIYDE

Specific function: May be a regulatory protein for the LCT genes [H]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790032, Length=99, Percent_Identity=37.3737373737374, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 23819; Mature: 23688

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSNTKVYLEIVKKIRSIMEEDGLVAGDRLPSERELSARLNVGRSSVREALRALELVGL
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
IETRRGEGTFIRNFYENGLVQLIAPFLLQDEKTRQDLLQTKRLIEKDMIRIVCNLADDTF
HHHCCCCCHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
STVLSNLKQALERQESSIQAFHQTFFKTLIEQVDNYLLYRIWMIVNDYVATLSCKVLIDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEVYRKLYKALEAKQEEETLNIYDE
HHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TSSNTKVYLEIVKKIRSIMEEDGLVAGDRLPSERELSARLNVGRSSVREALRALELVGL
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
IETRRGEGTFIRNFYENGLVQLIAPFLLQDEKTRQDLLQTKRLIEKDMIRIVCNLADDTF
HHHCCCCCHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
STVLSNLKQALERQESSIQAFHQTFFKTLIEQVDNYLLYRIWMIVNDYVATLSCKVLIDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEVYRKLYKALEAKQEEETLNIYDE
HHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8407843; 8041620; 9278503 [H]