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The map label for this gene is xseB [H]

Identifier: 152976583

GI number: 152976583

Start: 2947133

End: 2947363

Strand: Reverse

Name: xseB [H]

Synonym: Bcer98_2872

Alternate gene names: 152976583

Gene position: 2947363-2947133 (Counterclockwise)

Preceding gene: 152976584

Following gene: 152976582

Centisome position: 72.12

GC content: 38.53

Gene sequence:

>231_bases
ATGGAAAATAAATTGAGCTTTGAAGAGGCGATTTCACAGCTTGAGCATCTCGTTTCCAAGCTTGAACAAGGCGATGTTCC
TTTAGAAGAAGCAATTTCATACTTTAAAGAAGGGATGGAATTGTCTAAGTTGTGTGATGAGAAATTGAAAGATGTACAAG
AACAAATGGCAGTAATCCTTGGAGAAGATGGACAGCTTGAGCCATTTACAGCTTTAGGAGATGAAGCATAG

Upstream 100 bases:

>100_bases
AAAAGTGTAAAAGATGTTAGTGCTGGAGATGTAGTTTCCGTGCAATTACAAGATGGTATATTAGATTGTAATGTATCGAG
CGTAAAGGAGCGTGAATCAA

Downstream 100 bases:

>100_bases
TGGCATATGGAGATTTCGATGCTTTTGTAATAGAAAGCAAAATGTTTATAGAAAAAGAACTTGCGCGTTACGCGAATGAA
TTGCAATGTCCAAACGTGCT

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 76; Mature: 76

Protein sequence:

>76_residues
MENKLSFEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLKDVQEQMAVILGEDGQLEPFTALGDEA

Sequences:

>Translated_76_residues
MENKLSFEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLKDVQEQMAVILGEDGQLEPFTALGDEA
>Mature_76_residues
MENKLSFEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLKDVQEQMAVILGEDGQLEPFTALGDEA

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

Organism=Escherichia coli, GI1786624, Length=67, Percent_Identity=43.2835820895522, Blast_Score=62, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761
- ProDom:   PD028235 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 8516; Mature: 8516

Theoretical pI: Translated: 3.85; Mature: 3.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENKLSFEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLKDVQEQMAVIL
CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
GEDGQLEPFTALGDEA
CCCCCCCCHHHCCCCC
>Mature Secondary Structure
MENKLSFEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLKDVQEQMAVIL
CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
GEDGQLEPFTALGDEA
CCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA