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The map label for this gene is spoVAF [H]

Identifier: 152976474

GI number: 152976474

Start: 2846235

End: 2847707

Strand: Reverse

Name: spoVAF [H]

Synonym: Bcer98_2763

Alternate gene names: 152976474

Gene position: 2847707-2846235 (Counterclockwise)

Preceding gene: 152976475

Following gene: 152976473

Centisome position: 69.68

GC content: 35.17

Gene sequence:

>1473_bases
ATGACGAAAGAGAAGGCAATTAAAATCCCAATTTCTTCGTTCATAAGTGATAATGAAAATTATTTAAAACAAACAGCTGG
ATTAGGCGTAACATTCGATGTTGGAATTCGTAAATTTCATATTCTCGATAAAGAAATTGGAGTATTATTTGTAAATGGAT
TGTGTGATACAAACTACATTATCCCTATTCTAGAAGAAGCAGTAGATACAAATGAAATAAGAAATGCAGATGAAAATACT
GTTACACTTTTAGAAAATCGCCTGATTCATCAACAAGTAAGTAAGGTCAAGACGATGGATGAGGTAATGGTTCAAGTATT
ATCCGGCCTTGTTGTTATTTTTGTAGAAGGTGAAACAGAGGCTTTTGTAATAGATGTTCGCAGTTATCCAGGACGAACTC
CGACAGAACCGGATACGGAAAAGGTGGTGCGCGGGGCTAGGGATGGATTTGTTGAAAATATTGTTGTGAATACAGCATTA
ATTCGTAGGAGAATTCGTGATCCACGCCTTAGAAATGAAATTATTCGCGTAGGAGATAGGTCGCAAACAGATATTTGTAT
TACATATGTTCAAGATGTTGCTAATCCAGATTTAGTAAAAATTATAAAACAAGAGTTAAGCAATATTGAAGTAGATGGTA
TTACAATGGCAGACAAAACAATTGAAGAATTTGTGGTCAAACAAAGCTATAATCCCTTTCCGCTTATTCGATATACAGAA
AGACCGGACGTAGCAGCCAATCATTTGTTGGAAGGTCATGTATTAGTGATTACGGATACATCGCCAAGTGTTATGATTAC
ACCTACAACATACTTTCATCATTTACAACATGCGGAAGAATTTAGGCAAAATCCAGCAGTAGGTACATTTTTACGCTGGG
TACGATTCTTAGGTGTGCTATTTTCCTTATTTTTATTACCATTTTGGTTAGTATTTGTATTTGATCCAACATTGTTACCA
GAGAAACTTGCGTTCATTGGGCCGAACAAAATGACACATTTACCTATTTTATTACAAGTGTTATTGGCAGAGATTGGGCT
TGAATTTTTAAGAATGGCAGCCATTCATACTCCGACCCCGTTATCATCTGCTGCCGGCTTAATTTCAGCAATTTTAATTG
GGCAAATCGCAATTGATGTTGGATTATTTGTTCCAGAGGTTATTTTATATGTAGCAATCTCAATGATTGGCTCATATGCG
ACACCGAGTTATGAATTAGGGCTTGGCAATAAAATTGGAAAGTTATTTGTCATCATTTTAACGGGCTTATTTCATGAAAT
GGGGTTTGTCATTGGGATGACAATATTAATTTTATTTTTAACATCTATAAAAAGTTTACAAACACCATATTTATGGCCAT
TTTTACCATTTGATTGGGGAGCATTAACCAAAATTTTACTTCGACCAACGATGTCAAGTTTAAAAGTGCGTCCAAGTATA
GTCCGACCACAAAATATACGCAGGCAAAAATAA

Upstream 100 bases:

>100_bases
ATTGGAGATATCGGAAAAATGTGTGGAAATGATGAATGGAAGCGAGGTGCTCCCATTACGAAAAAGGCAATTCAATTCAT
TTTAGAAAGGAGTGGTTTTT

Downstream 100 bases:

>100_bases
GCAGAGAATTCTCTGCTTATTTTTCATGATAAATTTATTGTTTTTTAACAAAAAGTCAACATTTTTTTCGTACACTTAGA
GTAGATATTGTGTATGAAAG

Product: GerA spore germination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 490; Mature: 489

Protein sequence:

>490_residues
MTKEKAIKIPISSFISDNENYLKQTAGLGVTFDVGIRKFHILDKEIGVLFVNGLCDTNYIIPILEEAVDTNEIRNADENT
VTLLENRLIHQQVSKVKTMDEVMVQVLSGLVVIFVEGETEAFVIDVRSYPGRTPTEPDTEKVVRGARDGFVENIVVNTAL
IRRRIRDPRLRNEIIRVGDRSQTDICITYVQDVANPDLVKIIKQELSNIEVDGITMADKTIEEFVVKQSYNPFPLIRYTE
RPDVAANHLLEGHVLVITDTSPSVMITPTTYFHHLQHAEEFRQNPAVGTFLRWVRFLGVLFSLFLLPFWLVFVFDPTLLP
EKLAFIGPNKMTHLPILLQVLLAEIGLEFLRMAAIHTPTPLSSAAGLISAILIGQIAIDVGLFVPEVILYVAISMIGSYA
TPSYELGLGNKIGKLFVIILTGLFHEMGFVIGMTILILFLTSIKSLQTPYLWPFLPFDWGALTKILLRPTMSSLKVRPSI
VRPQNIRRQK

Sequences:

>Translated_490_residues
MTKEKAIKIPISSFISDNENYLKQTAGLGVTFDVGIRKFHILDKEIGVLFVNGLCDTNYIIPILEEAVDTNEIRNADENT
VTLLENRLIHQQVSKVKTMDEVMVQVLSGLVVIFVEGETEAFVIDVRSYPGRTPTEPDTEKVVRGARDGFVENIVVNTAL
IRRRIRDPRLRNEIIRVGDRSQTDICITYVQDVANPDLVKIIKQELSNIEVDGITMADKTIEEFVVKQSYNPFPLIRYTE
RPDVAANHLLEGHVLVITDTSPSVMITPTTYFHHLQHAEEFRQNPAVGTFLRWVRFLGVLFSLFLLPFWLVFVFDPTLLP
EKLAFIGPNKMTHLPILLQVLLAEIGLEFLRMAAIHTPTPLSSAAGLISAILIGQIAIDVGLFVPEVILYVAISMIGSYA
TPSYELGLGNKIGKLFVIILTGLFHEMGFVIGMTILILFLTSIKSLQTPYLWPFLPFDWGALTKILLRPTMSSLKVRPSI
VRPQNIRRQK
>Mature_489_residues
TKEKAIKIPISSFISDNENYLKQTAGLGVTFDVGIRKFHILDKEIGVLFVNGLCDTNYIIPILEEAVDTNEIRNADENTV
TLLENRLIHQQVSKVKTMDEVMVQVLSGLVVIFVEGETEAFVIDVRSYPGRTPTEPDTEKVVRGARDGFVENIVVNTALI
RRRIRDPRLRNEIIRVGDRSQTDICITYVQDVANPDLVKIIKQELSNIEVDGITMADKTIEEFVVKQSYNPFPLIRYTER
PDVAANHLLEGHVLVITDTSPSVMITPTTYFHHLQHAEEFRQNPAVGTFLRWVRFLGVLFSLFLLPFWLVFVFDPTLLPE
KLAFIGPNKMTHLPILLQVLLAEIGLEFLRMAAIHTPTPLSSAAGLISAILIGQIAIDVGLFVPEVILYVAISMIGSYAT
PSYELGLGNKIGKLFVIILTGLFHEMGFVIGMTILILFLTSIKSLQTPYLWPFLPFDWGALTKILLRPTMSSLKVRPSIV
RPQNIRRQK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 55147; Mature: 55015

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKEKAIKIPISSFISDNENYLKQTAGLGVTFDVGIRKFHILDKEIGVLFVNGLCDTNYI
CCCCCEEECCHHHHHCCCHHHHHHHHCCCEEEECCCEEEEEECCCCCEEEEECCCCCCCH
IPILEEAVDTNEIRNADENTVTLLENRLIHQQVSKVKTMDEVMVQVLSGLVVIFVEGETE
HHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC
AFVIDVRSYPGRTPTEPDTEKVVRGARDGFVENIVVNTALIRRRIRDPRLRNEIIRVGDR
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC
SQTDICITYVQDVANPDLVKIIKQELSNIEVDGITMADKTIEEFVVKQSYNPFPLIRYTE
CCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCEEEECC
RPDVAANHLLEGHVLVITDTSPSVMITPTTYFHHLQHAEEFRQNPAVGTFLRWVRFLGVL
CCCHHHHHHHCCCEEEEECCCCCEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
FSLFLLPFWLVFVFDPTLLPEKLAFIGPNKMTHLPILLQVLLAEIGLEFLRMAAIHTPTP
HHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LSSAAGLISAILIGQIAIDVGLFVPEVILYVAISMIGSYATPSYELGLGNKIGKLFVIIL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHH
TGLFHEMGFVIGMTILILFLTSIKSLQTPYLWPFLPFDWGALTKILLRPTMSSLKVRPSI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
VRPQNIRRQK
CCCCCCCCCC
>Mature Secondary Structure 
TKEKAIKIPISSFISDNENYLKQTAGLGVTFDVGIRKFHILDKEIGVLFVNGLCDTNYI
CCCCEEECCHHHHHCCCHHHHHHHHCCCEEEECCCEEEEEECCCCCEEEEECCCCCCCH
IPILEEAVDTNEIRNADENTVTLLENRLIHQQVSKVKTMDEVMVQVLSGLVVIFVEGETE
HHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC
AFVIDVRSYPGRTPTEPDTEKVVRGARDGFVENIVVNTALIRRRIRDPRLRNEIIRVGDR
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC
SQTDICITYVQDVANPDLVKIIKQELSNIEVDGITMADKTIEEFVVKQSYNPFPLIRYTE
CCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCEEEECC
RPDVAANHLLEGHVLVITDTSPSVMITPTTYFHHLQHAEEFRQNPAVGTFLRWVRFLGVL
CCCHHHHHHHCCCEEEEECCCCCEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
FSLFLLPFWLVFVFDPTLLPEKLAFIGPNKMTHLPILLQVLLAEIGLEFLRMAAIHTPTP
HHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LSSAAGLISAILIGQIAIDVGLFVPEVILYVAISMIGSYATPSYELGLGNKIGKLFVIIL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHH
TGLFHEMGFVIGMTILILFLTSIKSLQTPYLWPFLPFDWGALTKILLRPTMSSLKVRPSI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
VRPQNIRRQK
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 7934829; 1368705; 3926949 [H]