| Definition | Bacillus cereus subsp. cytotoxis NVH 391-98, complete genome. |
|---|---|
| Accession | NC_009674 |
| Length | 4,087,024 |
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The map label for this gene is spoVD [H]
Identifier: 152976277
GI number: 152976277
Start: 2665967
End: 2667883
Strand: Reverse
Name: spoVD [H]
Synonym: Bcer98_2565
Alternate gene names: 152976277
Gene position: 2667883-2665967 (Counterclockwise)
Preceding gene: 152976278
Following gene: 152976276
Centisome position: 65.28
GC content: 39.75
Gene sequence:
>1917_bases ATGCGTGTTTCGAATGTAACGGTGAGAAAACGACTGATTTTTATACTGATATGTGGCTTGCTTGTTTTTACGATTATCGA TATTCGGCTTGGATATGTACAATTTTTCCTGGGGAATATGCTAACGGATCGCGCAAAAGATTCATGGAGTCGTAATATTA CCTTTGAACCGGAACGTGGGAAGATTTTAGATCGAAATGGTGTAGAACTCGCAACAAATAAAAGTGCGCCAACTGTTTTT GTGGTACCAAGACAACTCGAAAATCCAGCGGAAACTGCAGAGAAGTTGGCTGCAGTTTTAGGTGTGGAGAAAGAAGAAAT TTATAAACGAATTACAAAGAAAGAATCTATCGTGAGACTCGACAAAGGTGGAAGGAAAATTCCGCATGATAAGGCGAAAG AAGTACGAAGTTTAAGTTTAAAAGGTGTATATATTGCGGAAGATTCTATTCGTCATTATCCATTTGGTAAATATTTAGCA CATGTGTTAGGCTTTGCTGGGAGTGATAATCAAGGTCTGATGGGGCTTGAAGCATATTATGATAAAGAGCTAAATGGCGA TAAAGGTTATGTTCGCTTTTTTGCTGATGCAAAAGGGCAGCGAATGCCTAATGTGGGAGATGATTTTAAAAAGCCAGAAG CGGGTTTGAATTTAAGGTTAACAATTGACTCTCGTATACAAGCGATCATGGAGAGGGAACTAAACATCGCGGATTCGACT TATAATCCGGATGGTATGATTGCAATTGCGATGAATCCGAAAAATGGTGAGATACTAGGGATGTCGAGCCGGCCAAGTTT TGATCCAGCAGATTTTCAAAATGTTTCTCCAGAAGTATTTAATCGAAACTTACCCGTATGGAGTACATATGAACCAGGAT CAACTTTTAAAATTATTACTTTAGCTGCGGCTCTAAATGAAAAATTAGTAGACTTAGAGAAAGATACGTTTTATGATGAT GGAGCAGCGGAAGTTGGTGGCGCTAGGCTGCGATGCTGGAAAGCTGGAGGCCACGGAAGTCAAACGTTTTTAGAGGTCGT ACAAAACTCTTGCAACCCTGGATTTATTGAGCTTGGAGACCGCCTCGGTAAAGAGAAGTTATTCCAATACATTCGAGATT TTGGATTTGGGCAAAAAACGGGAATTGACTTGCAAGGAGAAGGAAAAGGGATTTTATTTAATCTTGATAAGGTAGGACCA GTTGAACAAGCGACAACATCATTTGGGCAAGGAGTTTCTGTTACACCTATTCAGCAAGTAGCCGCAGTAGCCGCTGCTGT CAATGGCGGGAATTTATATCAACCTTATATTGCTAAGGAATTCGTTGATCCAATTACGAAGCAAGTTGTCAGTAAAAAAA GTCCAAGTGTGAAAAGGAAGGTTATTTCCAAGGAAACATCAGAGAAGGTTCGATATGCGTTAGAAAATGTTGTTGCGAAG GGTTCTGGTAGGAGCGCTTATATTGATGGGTATCGCGTTGGAGGAAAGACAGGAACAGCGCAAAAGGTAAAGGATGGAAA ATATTTAGACAATAACTATATTGTATCTTTTATCAGCTTTGCACCAGCAGATGATCCGCAAATTGTTGTGTATGTTGCTG TTGATAATCCGAAAGGGATCACGCAATTTGGTGGGGTAGTTGCTGCGCCGATTGTAGGGAATATACTTCGTGACGTTCTT CCTGCTATGGGGGTAGAACCGAGAAAAGAACAAGTGGAAAAAGAATATAAATGGGGCGATACACCTACTATAGAAGTTCC AGATTTAATTGGTATGGATAAAAAAGATTTACAAACACAACTCATAGACTTGAAGCTTGATGTGAGCGGTGAAGGAAAAA AGGTGATTAAGCAATCACCAGAAGCTGGTACAAAAGTAAAAGAAGGCTCAAAAATTAGAATTTACTTCGGTAATTAA
Upstream 100 bases:
>100_bases TAGGAAATTGTGAAAGTGATAAACAAAAGTAGAAAGTTCTAATCAAATCGGTACAAGCATATATTGGAACAAGCTAGGCG TAAGGGGGGCTTGTTCCAAT
Downstream 100 bases:
>100_bases AGGTAAGAGATTGTGTTTTATGGTACAATTGGTGGAAGTTAGTTCTATCATTTAGAGAAATGTTCTCGTGAAAATGCATT CTTATGAAAAGAAGGCATAT
Product: stage V sporulation protein D
Products: NA
Alternate protein names: Sporulation-specific penicillin-binding protein [H]
Number of amino acids: Translated: 638; Mature: 638
Protein sequence:
>638_residues MRVSNVTVRKRLIFILICGLLVFTIIDIRLGYVQFFLGNMLTDRAKDSWSRNITFEPERGKILDRNGVELATNKSAPTVF VVPRQLENPAETAEKLAAVLGVEKEEIYKRITKKESIVRLDKGGRKIPHDKAKEVRSLSLKGVYIAEDSIRHYPFGKYLA HVLGFAGSDNQGLMGLEAYYDKELNGDKGYVRFFADAKGQRMPNVGDDFKKPEAGLNLRLTIDSRIQAIMERELNIADST YNPDGMIAIAMNPKNGEILGMSSRPSFDPADFQNVSPEVFNRNLPVWSTYEPGSTFKIITLAAALNEKLVDLEKDTFYDD GAAEVGGARLRCWKAGGHGSQTFLEVVQNSCNPGFIELGDRLGKEKLFQYIRDFGFGQKTGIDLQGEGKGILFNLDKVGP VEQATTSFGQGVSVTPIQQVAAVAAAVNGGNLYQPYIAKEFVDPITKQVVSKKSPSVKRKVISKETSEKVRYALENVVAK GSGRSAYIDGYRVGGKTGTAQKVKDGKYLDNNYIVSFISFAPADDPQIVVYVAVDNPKGITQFGGVVAAPIVGNILRDVL PAMGVEPRKEQVEKEYKWGDTPTIEVPDLIGMDKKDLQTQLIDLKLDVSGEGKKVIKQSPEAGTKVKEGSKIRIYFGN
Sequences:
>Translated_638_residues MRVSNVTVRKRLIFILICGLLVFTIIDIRLGYVQFFLGNMLTDRAKDSWSRNITFEPERGKILDRNGVELATNKSAPTVF VVPRQLENPAETAEKLAAVLGVEKEEIYKRITKKESIVRLDKGGRKIPHDKAKEVRSLSLKGVYIAEDSIRHYPFGKYLA HVLGFAGSDNQGLMGLEAYYDKELNGDKGYVRFFADAKGQRMPNVGDDFKKPEAGLNLRLTIDSRIQAIMERELNIADST YNPDGMIAIAMNPKNGEILGMSSRPSFDPADFQNVSPEVFNRNLPVWSTYEPGSTFKIITLAAALNEKLVDLEKDTFYDD GAAEVGGARLRCWKAGGHGSQTFLEVVQNSCNPGFIELGDRLGKEKLFQYIRDFGFGQKTGIDLQGEGKGILFNLDKVGP VEQATTSFGQGVSVTPIQQVAAVAAAVNGGNLYQPYIAKEFVDPITKQVVSKKSPSVKRKVISKETSEKVRYALENVVAK GSGRSAYIDGYRVGGKTGTAQKVKDGKYLDNNYIVSFISFAPADDPQIVVYVAVDNPKGITQFGGVVAAPIVGNILRDVL PAMGVEPRKEQVEKEYKWGDTPTIEVPDLIGMDKKDLQTQLIDLKLDVSGEGKKVIKQSPEAGTKVKEGSKIRIYFGN >Mature_638_residues MRVSNVTVRKRLIFILICGLLVFTIIDIRLGYVQFFLGNMLTDRAKDSWSRNITFEPERGKILDRNGVELATNKSAPTVF VVPRQLENPAETAEKLAAVLGVEKEEIYKRITKKESIVRLDKGGRKIPHDKAKEVRSLSLKGVYIAEDSIRHYPFGKYLA HVLGFAGSDNQGLMGLEAYYDKELNGDKGYVRFFADAKGQRMPNVGDDFKKPEAGLNLRLTIDSRIQAIMERELNIADST YNPDGMIAIAMNPKNGEILGMSSRPSFDPADFQNVSPEVFNRNLPVWSTYEPGSTFKIITLAAALNEKLVDLEKDTFYDD GAAEVGGARLRCWKAGGHGSQTFLEVVQNSCNPGFIELGDRLGKEKLFQYIRDFGFGQKTGIDLQGEGKGILFNLDKVGP VEQATTSFGQGVSVTPIQQVAAVAAAVNGGNLYQPYIAKEFVDPITKQVVSKKSPSVKRKVISKETSEKVRYALENVVAK GSGRSAYIDGYRVGGKTGTAQKVKDGKYLDNNYIVSFISFAPADDPQIVVYVAVDNPKGITQFGGVVAAPIVGNILRDVL PAMGVEPRKEQVEKEYKWGDTPTIEVPDLIGMDKKDLQTQLIDLKLDVSGEGKKVIKQSPEAGTKVKEGSKIRIYFGN
Specific function: Penicillin-binding protein with an unknown catalytic activity. May have a specialized role in the morphogenesis of spore cortex, which is a modified form of peptidoglycan. Pore cortex formation is determined primarily by the mother cell [H]
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PASTA domain [H]
Homologues:
Organism=Escherichia coli, GI1786272, Length=563, Percent_Identity=29.6625222024867, Blast_Score=230, Evalue=2e-61, Organism=Escherichia coli, GI1786854, Length=625, Percent_Identity=24.64, Blast_Score=146, Evalue=4e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR005543 - InterPro: IPR005311 - InterPro: IPR001460 - InterPro: IPR011927 [H]
Pfam domain/function: PF03793 PASTA; PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 70288; Mature: 70288
Theoretical pI: Translated: 9.29; Mature: 9.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVSNVTVRKRLIFILICGLLVFTIIDIRLGYVQFFLGNMLTDRAKDSWSRNITFEPERG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCC KILDRNGVELATNKSAPTVFVVPRQLENPAETAEKLAAVLGVEKEEIYKRITKKESIVRL CEECCCCCEEEECCCCCEEEEECHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEE DKGGRKIPHDKAKEVRSLSLKGVYIAEDSIRHYPFGKYLAHVLGFAGSDNQGLMGLEAYY CCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCEEHHHHH DKELNGDKGYVRFFADAKGQRMPNVGDDFKKPEAGLNLRLTIDSRIQAIMERELNIADST CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCC YNPDGMIAIAMNPKNGEILGMSSRPSFDPADFQNVSPEVFNRNLPVWSTYEPGSTFKIIT CCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCCCEEEEE LAAALNEKLVDLEKDTFYDDGAAEVGGARLRCWKAGGHGSQTFLEVVQNSCNPGFIELGD EHHHHHHHHHCCCCCCCCCCCCHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHH RLGKEKLFQYIRDFGFGQKTGIDLQGEGKGILFNLDKVGPVEQATTSFGQGVSVTPIQQV HCCHHHHHHHHHHCCCCCCCCCEECCCCCEEEEECCCCCCHHHHHHHHCCCCCCCHHHHH AAVAAAVNGGNLYQPYIAKEFVDPITKQVVSKKSPSVKRKVISKETSEKVRYALENVVAK HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC GSGRSAYIDGYRVGGKTGTAQKVKDGKYLDNNYIVSFISFAPADDPQIVVYVAVDNPKGI CCCCEEEECCEEECCCCCCCHHCCCCCEECCCEEEEEEEECCCCCCCEEEEEEECCCCCH TQFGGVVAAPIVGNILRDVLPAMGVEPRKEQVEKEYKWGDTPTIEVPDLIGMDKKDLQTQ HHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEECCHHCCCCHHHHHEE LIDLKLDVSGEGKKVIKQSPEAGTKVKEGSKIRIYFGN EEEEEEECCCCCHHHHHCCCCCCCCCCCCCEEEEEECC >Mature Secondary Structure MRVSNVTVRKRLIFILICGLLVFTIIDIRLGYVQFFLGNMLTDRAKDSWSRNITFEPERG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCC KILDRNGVELATNKSAPTVFVVPRQLENPAETAEKLAAVLGVEKEEIYKRITKKESIVRL CEECCCCCEEEECCCCCEEEEECHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEE DKGGRKIPHDKAKEVRSLSLKGVYIAEDSIRHYPFGKYLAHVLGFAGSDNQGLMGLEAYY CCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCEEHHHHH DKELNGDKGYVRFFADAKGQRMPNVGDDFKKPEAGLNLRLTIDSRIQAIMERELNIADST CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCC YNPDGMIAIAMNPKNGEILGMSSRPSFDPADFQNVSPEVFNRNLPVWSTYEPGSTFKIIT CCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCCCEEEEE LAAALNEKLVDLEKDTFYDDGAAEVGGARLRCWKAGGHGSQTFLEVVQNSCNPGFIELGD EHHHHHHHHHCCCCCCCCCCCCHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHH RLGKEKLFQYIRDFGFGQKTGIDLQGEGKGILFNLDKVGPVEQATTSFGQGVSVTPIQQV HCCHHHHHHHHHHCCCCCCCCCEECCCCCEEEEECCCCCCHHHHHHHHCCCCCCCHHHHH AAVAAAVNGGNLYQPYIAKEFVDPITKQVVSKKSPSVKRKVISKETSEKVRYALENVVAK HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC GSGRSAYIDGYRVGGKTGTAQKVKDGKYLDNNYIVSFISFAPADDPQIVVYVAVDNPKGI CCCCEEEECCEEECCCCCCCHHCCCCCEECCCEEEEEEEECCCCCCCEEEEEEECCCCCH TQFGGVVAAPIVGNILRDVLPAMGVEPRKEQVEKEYKWGDTPTIEVPDLIGMDKKDLQTQ HHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEECCHHCCCCHHHHHEE LIDLKLDVSGEGKKVIKQSPEAGTKVKEGSKIRIYFGN EEEEEEECCCCCHHHHHCCCCCCCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8289242; 9384377; 8244929; 8436954 [H]