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The map label for this gene is rsmB [H]

Identifier: 152976231

GI number: 152976231

Start: 2616080

End: 2617414

Strand: Reverse

Name: rsmB [H]

Synonym: Bcer98_2517

Alternate gene names: 152976231

Gene position: 2617414-2616080 (Counterclockwise)

Preceding gene: 152976232

Following gene: 152976230

Centisome position: 64.04

GC content: 38.43

Gene sequence:

>1335_bases
ATGAGACAAAACGTTCGTGAGTTAGCTCTTGATGGATTAATGCAAGTAGAAAAAAGCGGTGCTTACAGTAACTTGCTATT
AAATCATTTGATTGAAAAAAGTACAATTCATAAAAAAGATATCGGTTTATTAACGGAGATTGTGTATGGAACGATTCAAC
GTCGTGACACATTAGACTATTATTTACAGCCGTTTTTAAGAAAGAAAGTGGATGCATGGGTAAGGGTATTACTTCGCTTA
TCTTTATATCAAATGCTTTATTTAGACCGAGTTCCAGAACGAGCTGCTATTCATGAAGCAGTTGAAATCGCAAAACGTCG
CGGACATAAAGGAATTGCCGGAATGGTGAATGGGGTATTGCGCTCCATTCAACGAGAAGGTGTACCTTCTTTAGATGAGT
TGAAAGATCCTGTGGAGCGTCTTGCAATTGCGATGAGTCATCCGACATGGCTTGTACAAGAATGGGTAGCTGCATATGGT
TTAGAGACAGCAGAAAAGATGTGTGAAGTAAATATGTTACCACCCGTCCCAACAGCGCGAGTAAATGTTGATAAAATAAC
AGTAGAAGAAGCGATTGATTTATTAAATCAAGAAGGTGTTGAAGCCAAACGCGGCGATTTATCTGATGATGCAATTCAAA
TTGAAAAAGGAAATGTAGCTCATACAGAAGCGTTCCAAAAGGGGTTTCTTTCTATTCAAGATGAAAGTTCCATGCTTGTC
GCACGAGCTGTAGAACCAAGTAAAGGAGATATGATTCTTGATAGCTGTGCTGCTCCTGGCGGAAAAACAACGCATATGGC
AGAACGATTACGAGGAACTGGTAAGGTTATGTCTCTTGATTTACATGATCATAAAGTGCGCTTAATTAAACAACAAGCGA
ATCGACTTGGTCTGGAGAATGTGGAAACAAAGGCATTGGATGCTAGAAAGGTGCAAGAGCACTTTCAAAATGAAAGTTTC
GATAAAATATTAGTTGATGCACCATGCTCTGGATTTGGTGTCATTCGACGTAAACCGGATATTAAATTAGGGAAAGAAAA
AGGAGATAGTGAAAGACTGTCGACAATTCAACAAACGATATTAGATAAAGTTGCTCCTCTGTTAAAGACAGGCGGCCGCC
TTGTCTATAGTACATGTACAATTGAAAAAATAGAGAATGAACAAGTGGTAGCAAATTTTTTACAAAAGCATCCAGAATTT
GAGTGGGATACTACGATGCAAGAACGTATGCCAGAAAAATTACGTCCATATATCAATAAAGGACAAGTGCAAATTTTACC
GCATTATTTTGCGACGGATGGCTTTTATATTGCTTGTTTAAGAAAGAAGGTGTAG

Upstream 100 bases:

>100_bases
AGATTACCGAGTTACAGCCAGCTGGTAAAAAACGTATGAGTTCTTCACAATTTTTACGCGGGGCAAAACTGGAGATTGGT
ATGAAGTTAGGAGAAGATGC

Downstream 100 bases:

>100_bases
CATCATGGAAACAACTACAAGAAAACAAAAGAAAGCTTTAGAAACAAAGAAACCATCTATTTACTCTTTACAACTTCATG
AAATGCAAGAGTGGTTAAAG

Product: sun protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MRQNVRELALDGLMQVEKSGAYSNLLLNHLIEKSTIHKKDIGLLTEIVYGTIQRRDTLDYYLQPFLRKKVDAWVRVLLRL
SLYQMLYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQREGVPSLDELKDPVERLAIAMSHPTWLVQEWVAAYG
LETAEKMCEVNMLPPVPTARVNVDKITVEEAIDLLNQEGVEAKRGDLSDDAIQIEKGNVAHTEAFQKGFLSIQDESSMLV
ARAVEPSKGDMILDSCAAPGGKTTHMAERLRGTGKVMSLDLHDHKVRLIKQQANRLGLENVETKALDARKVQEHFQNESF
DKILVDAPCSGFGVIRRKPDIKLGKEKGDSERLSTIQQTILDKVAPLLKTGGRLVYSTCTIEKIENEQVVANFLQKHPEF
EWDTTMQERMPEKLRPYINKGQVQILPHYFATDGFYIACLRKKV

Sequences:

>Translated_444_residues
MRQNVRELALDGLMQVEKSGAYSNLLLNHLIEKSTIHKKDIGLLTEIVYGTIQRRDTLDYYLQPFLRKKVDAWVRVLLRL
SLYQMLYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQREGVPSLDELKDPVERLAIAMSHPTWLVQEWVAAYG
LETAEKMCEVNMLPPVPTARVNVDKITVEEAIDLLNQEGVEAKRGDLSDDAIQIEKGNVAHTEAFQKGFLSIQDESSMLV
ARAVEPSKGDMILDSCAAPGGKTTHMAERLRGTGKVMSLDLHDHKVRLIKQQANRLGLENVETKALDARKVQEHFQNESF
DKILVDAPCSGFGVIRRKPDIKLGKEKGDSERLSTIQQTILDKVAPLLKTGGRLVYSTCTIEKIENEQVVANFLQKHPEF
EWDTTMQERMPEKLRPYINKGQVQILPHYFATDGFYIACLRKKV
>Mature_444_residues
MRQNVRELALDGLMQVEKSGAYSNLLLNHLIEKSTIHKKDIGLLTEIVYGTIQRRDTLDYYLQPFLRKKVDAWVRVLLRL
SLYQMLYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQREGVPSLDELKDPVERLAIAMSHPTWLVQEWVAAYG
LETAEKMCEVNMLPPVPTARVNVDKITVEEAIDLLNQEGVEAKRGDLSDDAIQIEKGNVAHTEAFQKGFLSIQDESSMLV
ARAVEPSKGDMILDSCAAPGGKTTHMAERLRGTGKVMSLDLHDHKVRLIKQQANRLGLENVETKALDARKVQEHFQNESF
DKILVDAPCSGFGVIRRKPDIKLGKEKGDSERLSTIQQTILDKVAPLLKTGGRLVYSTCTIEKIENEQVVANFLQKHPEF
EWDTTMQERMPEKLRPYINKGQVQILPHYFATDGFYIACLRKKV

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=357, Percent_Identity=31.9327731092437, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI76150623, Length=357, Percent_Identity=31.9327731092437, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI32698918, Length=181, Percent_Identity=39.7790055248619, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI39995082, Length=284, Percent_Identity=28.5211267605634, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI301336155, Length=284, Percent_Identity=28.5211267605634, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI8922322, Length=249, Percent_Identity=28.9156626506024, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI23199998, Length=249, Percent_Identity=28.9156626506024, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI270288818, Length=249, Percent_Identity=28.9156626506024, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI270288816, Length=249, Percent_Identity=28.9156626506024, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI11545785, Length=173, Percent_Identity=32.9479768786127, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI40316918, Length=196, Percent_Identity=27.0408163265306, Blast_Score=69, Evalue=8e-12,
Organism=Escherichia coli, GI2367212, Length=446, Percent_Identity=32.5112107623318, Blast_Score=207, Evalue=8e-55,
Organism=Escherichia coli, GI87081985, Length=270, Percent_Identity=29.2592592592593, Blast_Score=131, Evalue=7e-32,
Organism=Caenorhabditis elegans, GI17536757, Length=239, Percent_Identity=33.8912133891213, Blast_Score=119, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI71998419, Length=225, Percent_Identity=31.1111111111111, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI115534021, Length=225, Percent_Identity=31.1111111111111, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI25143471, Length=189, Percent_Identity=34.3915343915344, Blast_Score=86, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6324268, Length=324, Percent_Identity=28.7037037037037, Blast_Score=114, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6319447, Length=183, Percent_Identity=33.879781420765, Blast_Score=91, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6324306, Length=216, Percent_Identity=26.3888888888889, Blast_Score=71, Evalue=3e-13,
Organism=Drosophila melanogaster, GI22024126, Length=238, Percent_Identity=32.3529411764706, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI21355201, Length=282, Percent_Identity=28.3687943262411, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24668781, Length=234, Percent_Identity=32.4786324786325, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI21356513, Length=234, Percent_Identity=32.4786324786325, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI21356579, Length=232, Percent_Identity=28.8793103448276, Blast_Score=89, Evalue=8e-18,
Organism=Drosophila melanogaster, GI19920494, Length=217, Percent_Identity=33.6405529953917, Blast_Score=82, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: 2.1.1.-

Molecular weight: Translated: 50212; Mature: 50212

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: PS01153 NOL1_NOP2_SUN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQNVRELALDGLMQVEKSGAYSNLLLNHLIEKSTIHKKDIGLLTEIVYGTIQRRDTLDY
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHH
YLQPFLRKKVDAWVRVLLRLSLYQMLYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RSIQREGVPSLDELKDPVERLAIAMSHPTWLVQEWVAAYGLETAEKMCEVNMLPPVPTAR
HHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCC
VNVDKITVEEAIDLLNQEGVEAKRGDLSDDAIQIEKGNVAHTEAFQKGFLSIQDESSMLV
CCHHHEEHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHCCCEECCCCCEEE
ARAVEPSKGDMILDSCAAPGGKTTHMAERLRGTGKVMSLDLHDHKVRLIKQQANRLGLEN
EECCCCCCCCEEHHHHCCCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCH
VETKALDARKVQEHFQNESFDKILVDAPCSGFGVIRRKPDIKLGKEKGDSERLSTIQQTI
HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHH
LDKVAPLLKTGGRLVYSTCTIEKIENEQVVANFLQKHPEFEWDTTMQERMPEKLRPYINK
HHHHHHHHHCCCEEEEEEEHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHHCC
GQVQILPHYFATDGFYIACLRKKV
CCEEEECHHHCCCCEEEEEECCCC
>Mature Secondary Structure
MRQNVRELALDGLMQVEKSGAYSNLLLNHLIEKSTIHKKDIGLLTEIVYGTIQRRDTLDY
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHH
YLQPFLRKKVDAWVRVLLRLSLYQMLYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RSIQREGVPSLDELKDPVERLAIAMSHPTWLVQEWVAAYGLETAEKMCEVNMLPPVPTAR
HHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCC
VNVDKITVEEAIDLLNQEGVEAKRGDLSDDAIQIEKGNVAHTEAFQKGFLSIQDESSMLV
CCHHHEEHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHCCCEECCCCCEEE
ARAVEPSKGDMILDSCAAPGGKTTHMAERLRGTGKVMSLDLHDHKVRLIKQQANRLGLEN
EECCCCCCCCEEHHHHCCCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCH
VETKALDARKVQEHFQNESFDKILVDAPCSGFGVIRRKPDIKLGKEKGDSERLSTIQQTI
HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHH
LDKVAPLLKTGGRLVYSTCTIEKIENEQVVANFLQKHPEFEWDTTMQERMPEKLRPYINK
HHHHHHHHHCCCEEEEEEEHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHHCC
GQVQILPHYFATDGFYIACLRKKV
CCEEEECHHHCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377; 9086272 [H]