Click here to switch to the map view.

The map label for this gene is rimM

Identifier: 152976208

GI number: 152976208

Start: 2592255

End: 2592770

Strand: Reverse

Name: rimM

Synonym: Bcer98_2494

Alternate gene names: 152976208

Gene position: 2592770-2592255 (Counterclockwise)

Preceding gene: 152976209

Following gene: 152976207

Centisome position: 63.44

GC content: 38.57

Gene sequence:

>516_bases
ATGACAAAATGGTTTAATGTAGGAAAAATTGTAAATACCCATGGTGTGAGAGGAGAGGTTCGCGTCATCTCTCGCACCGA
TTTCCCAGAAGAGCGATATAAAGTTGGGAATACATTGTACATATGGGGAGAGAAAGGGACTGAACCTCTTCCGGTAAAGG
TTACATCTCATCGTCAACATAAAACGTTTGACCTATTAACATTTGAAGGGTATAGCAATGTAAATGAGGTTGAGAAATTT
AAAGGTTCCCTGTTAAAAGTACCAGAAGAGCAATTGGGTGAGCTAGCAGAAGGTGAATATTACTACCATGAAGTGATCGG
TTGCAAAGTTGTAACGGAAAATGGTGAAGAGTTAGGGACGATTACGGAAATTTTATCTCCTGGTGCGAATGATGTTTGGG
TAATTAAGCGTCCAAAAGGACAAGATTTGTTAATTCCATACATTGATGATATTGTATTGCAGGTTAATGTGGAACAAAAA
CAAGTGACCATTCATGTAATGGAAGGATTGCTATGA

Upstream 100 bases:

>100_bases
ATTTCCTCTCCCTTTTTTAACATGTAAAGAGAATTTGTATGCTCCGTATATAAAATGGAGATGCTGAATTTATATAGAAG
CCAGAGGTGACATACTGTTT

Downstream 100 bases:

>100_bases
TGAAAATTGACATTTTAACACTATTTCCAGAGATGTTCACCGGTGTATTTGGGTCTTCCATTTTAAAGAAAGCGCAAGAA
AAAGAAGCGGTTGAACTTCG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MTKWFNVGKIVNTHGVRGEVRVISRTDFPEERYKVGNTLYIWGEKGTEPLPVKVTSHRQHKTFDLLTFEGYSNVNEVEKF
KGSLLKVPEEQLGELAEGEYYYHEVIGCKVVTENGEELGTITEILSPGANDVWVIKRPKGQDLLIPYIDDIVLQVNVEQK
QVTIHVMEGLL

Sequences:

>Translated_171_residues
MTKWFNVGKIVNTHGVRGEVRVISRTDFPEERYKVGNTLYIWGEKGTEPLPVKVTSHRQHKTFDLLTFEGYSNVNEVEKF
KGSLLKVPEEQLGELAEGEYYYHEVIGCKVVTENGEELGTITEILSPGANDVWVIKRPKGQDLLIPYIDDIVLQVNVEQK
QVTIHVMEGLL
>Mature_170_residues
TKWFNVGKIVNTHGVRGEVRVISRTDFPEERYKVGNTLYIWGEKGTEPLPVKVTSHRQHKTFDLLTFEGYSNVNEVEKFK
GSLLKVPEEQLGELAEGEYYYHEVIGCKVVTENGEELGTITEILSPGANDVWVIKRPKGQDLLIPYIDDIVLQVNVEQKQ
VTIHVMEGLL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=153, Percent_Identity=28.1045751633987, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_BACCN (A7GRH2)

Other databases:

- EMBL:   CP000764
- RefSeq:   YP_001375725.1
- ProteinModelPortal:   A7GRH2
- SMR:   A7GRH2
- STRING:   A7GRH2
- EnsemblBacteria:   EBBACT00000036081
- GeneID:   5345728
- GenomeReviews:   CP000764_GR
- KEGG:   bcy:Bcer98_2494
- eggNOG:   COG0806
- GeneTree:   EBGT00050000002368
- HOGENOM:   HBG703775
- OMA:   PDEFYDH
- ProtClustDB:   PRK00122
- BioCyc:   BCER315749:BCER98_2494-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19471; Mature: 19340

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKWFNVGKIVNTHGVRGEVRVISRTDFPEERYKVGNTLYIWGEKGTEPLPVKVTSHRQH
CCCEECCCEEEECCCCCCEEEEEECCCCCHHHHCCCCEEEEECCCCCCCCEEEEECCCCC
KTFDLLTFEGYSNVNEVEKFKGSLLKVPEEQLGELAEGEYYYHEVIGCKVVTENGEELGT
CEEEEEEECCCCCHHHHHHHCCCEEECCHHHHHHHHCCCEEEEEEEEEEEEECCCCHHHH
ITEILSPGANDVWVIKRPKGQDLLIPYIDDIVLQVNVEQKQVTIHVMEGLL
HHHHHCCCCCCEEEEECCCCCEEEEECCCEEEEEEECCHHEEEEEEECCCC
>Mature Secondary Structure 
TKWFNVGKIVNTHGVRGEVRVISRTDFPEERYKVGNTLYIWGEKGTEPLPVKVTSHRQH
CCEECCCEEEECCCCCCEEEEEECCCCCHHHHCCCCEEEEECCCCCCCCEEEEECCCCC
KTFDLLTFEGYSNVNEVEKFKGSLLKVPEEQLGELAEGEYYYHEVIGCKVVTENGEELGT
CEEEEEEECCCCCHHHHHHHCCCEEECCHHHHHHHHCCCEEEEEEEEEEEEECCCCHHHH
ITEILSPGANDVWVIKRPKGQDLLIPYIDDIVLQVNVEQKQVTIHVMEGLL
HHHHHCCCCCCEEEEECCCCCEEEEECCCEEEEEEECCHHEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA