Click here to switch to the map view.

The map label for this gene is ymcA [H]

Identifier: 152976137

GI number: 152976137

Start: 2513773

End: 2514204

Strand: Reverse

Name: ymcA [H]

Synonym: Bcer98_2423

Alternate gene names: 152976137

Gene position: 2514204-2513773 (Counterclockwise)

Preceding gene: 152976138

Following gene: 152976136

Centisome position: 61.52

GC content: 33.56

Gene sequence:

>432_bases
ATGAAAGTCTATACAAAGGATGAAATTGTTGAGCAAGCGAAAGAGTTAGCAAAAATGATTTCTGAAACAGAAGAAGTAGA
TTTCTTCAAGCGCGCAGAAGCGCAAATTCATAAAAATGAAAATGTAAAACGTATAATTGATGAAATAAAAGCTTTGCAAA
AACAAGCTGTAAACTTGCAACATTATGGAAAATGGGAAGCTTTGAAAAAAGTAGAAGCAGAGATTGATGCTCTTCACGAT
CGGTTAGATGGTATCCCTGTTGTACAGGAATTCAAATCTTCACAAACATATGTAAATGATTTACTACAGCTTGTAGCGAG
TACAATTTCTAATAAAGTAACAGATGAAATTTTAATTTCAACTGGCGGTGATGTACTGAAAGGTGAAACCGGTGCAGAAA
TAGAAAGTAAAAAAGGAAATTGCGGTTGTTAA

Upstream 100 bases:

>100_bases
CAAAATCTGTAATCGGTCAGCTTGTAAAAGTAAAAATTACTGAAGCGAAAACTTGGTCTCTAAACGGGGAATTAGTTGAG
GAGCCGATTGAGGTGAAATA

Downstream 100 bases:

>100_bases
AAGAGATGCCCGAGTGGCATCTCTTTTTATTTGCAGAAAGTTGGATGTAATGAAGTTAATAAGAAGATAACGAATAAGAC
TAGCCCAAGTTATAGTAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MKVYTKDEIVEQAKELAKMISETEEVDFFKRAEAQIHKNENVKRIIDEIKALQKQAVNLQHYGKWEALKKVEAEIDALHD
RLDGIPVVQEFKSSQTYVNDLLQLVASTISNKVTDEILISTGGDVLKGETGAEIESKKGNCGC

Sequences:

>Translated_143_residues
MKVYTKDEIVEQAKELAKMISETEEVDFFKRAEAQIHKNENVKRIIDEIKALQKQAVNLQHYGKWEALKKVEAEIDALHD
RLDGIPVVQEFKSSQTYVNDLLQLVASTISNKVTDEILISTGGDVLKGETGAEIESKKGNCGC
>Mature_143_residues
MKVYTKDEIVEQAKELAKMISETEEVDFFKRAEAQIHKNENVKRIIDEIKALQKQAVNLQHYGKWEALKKVEAEIDALHD
RLDGIPVVQEFKSSQTYVNDLLQLVASTISNKVTDEILISTGGDVLKGETGAEIESKKGNCGC

Specific function: May work together with ylbF to regulate community development [H]

COG id: COG4550

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016783
- InterPro:   IPR010368 [H]

Pfam domain/function: PF06133 DUF964 [H]

EC number: NA

Molecular weight: Translated: 16048; Mature: 16048

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVYTKDEIVEQAKELAKMISETEEVDFFKRAEAQIHKNENVKRIIDEIKALQKQAVNLQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHH
HYGKWEALKKVEAEIDALHDRLDGIPVVQEFKSSQTYVNDLLQLVASTISNKVTDEILIS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGGDVLKGETGAEIESKKGNCGC
CCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKVYTKDEIVEQAKELAKMISETEEVDFFKRAEAQIHKNENVKRIIDEIKALQKQAVNLQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHH
HYGKWEALKKVEAEIDALHDRLDGIPVVQEFKSSQTYVNDLLQLVASTISNKVTDEILIS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGGDVLKGETGAEIESKKGNCGC
CCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]