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The map label for this gene is ycgE [H]

Identifier: 152969340

GI number: 152969340

Start: 869905

End: 870639

Strand: Direct

Name: ycgE [H]

Synonym: KPN_00783

Alternate gene names: 152969340

Gene position: 869905-870639 (Clockwise)

Preceding gene: 152969339

Following gene: 152969342

Centisome position: 16.37

GC content: 56.46

Gene sequence:

>735_bases
ATGGCGTTTTACAGTATCGGTGAAGTCGCCGAACGTTGCGGAATCAATCCGGTCACACTGCGCGCCTGGCAGCGTCGTTA
CGGTCTACTGAAACCGCAGCGTAGCGAAGGCGGGCATCGACAATTTGATGAAGAAGATATCCTGCGTATCGAAGAGATCA
AGCGCTGGATAGAGCGCGGTGTATCAGTAGGGAAAGTCAAAGCGCTGCTGGAGGATAACCTGCCGGCGGCGCGCGACGAA
TCCGCGCATCTTCAGGAAGAGATGATGTCCATTCTGCGTTATATGCAGCCCGCCAGAATCCGCGCCAAATTAATGGCGCT
CAGTCATCAACACCCCGTCGACACCCTCATCGATAGCCTGTTAGTGCCGGTACGACAGCGTCTCAAGCTGGATCAGAATA
CCTCGCTGGTGATTAGCAGCATGCTGGACGGCCTGTTAATTGACTGCGTAGCGTTGTTTCTCGCCGAAGCGCGTAAAAAA
AATGGCAAAGAGACGCTGCTGGTGGGCTGGAGCAATGAGGACAGGACGCGTCTGTGGCTGGAGGCATGGCGTCTTTCCCA
ACGCGGCTGGCATGTCAACGTTCTCGCCGAACCGCTGGAGTCGCCGCGGCCTGAGCTATTTCCCGGGCAGCATATTTTCG
TCTGGACCGGACGTGCCGCCACGCCTCTGCAGGAGGAGTTGCTCAGCCACTGGCAGGAGCAGGGCTTCAGCATCCATTTT
CACGGCCAAAATTAA

Upstream 100 bases:

>100_bases
CGCAACCTGATATCTTTATCTGTACAAGAAAATAGAGTTGTACAGGATGCCTGAATTCGTTAGTTTAGGTATTAAGGTAT
CAGGTTGATGTGAGGCTGCT

Downstream 100 bases:

>100_bases
GCGCCCCGATCCGTGGTGCGGATCAGGGCTTGAGTGCTGGGTTACAGGTGAATCTGGCTCCAGGATTTGAACGTTTCGCT
GCGGCTGATATTAAAAAAAT

Product: putative regulatory protein MerR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MAFYSIGEVAERCGINPVTLRAWQRRYGLLKPQRSEGGHRQFDEEDILRIEEIKRWIERGVSVGKVKALLEDNLPAARDE
SAHLQEEMMSILRYMQPARIRAKLMALSHQHPVDTLIDSLLVPVRQRLKLDQNTSLVISSMLDGLLIDCVALFLAEARKK
NGKETLLVGWSNEDRTRLWLEAWRLSQRGWHVNVLAEPLESPRPELFPGQHIFVWTGRAATPLQEELLSHWQEQGFSIHF
HGQN

Sequences:

>Translated_244_residues
MAFYSIGEVAERCGINPVTLRAWQRRYGLLKPQRSEGGHRQFDEEDILRIEEIKRWIERGVSVGKVKALLEDNLPAARDE
SAHLQEEMMSILRYMQPARIRAKLMALSHQHPVDTLIDSLLVPVRQRLKLDQNTSLVISSMLDGLLIDCVALFLAEARKK
NGKETLLVGWSNEDRTRLWLEAWRLSQRGWHVNVLAEPLESPRPELFPGQHIFVWTGRAATPLQEELLSHWQEQGFSIHF
HGQN
>Mature_243_residues
AFYSIGEVAERCGINPVTLRAWQRRYGLLKPQRSEGGHRQFDEEDILRIEEIKRWIERGVSVGKVKALLEDNLPAARDES
AHLQEEMMSILRYMQPARIRAKLMALSHQHPVDTLIDSLLVPVRQRLKLDQNTSLVISSMLDGLLIDCVALFLAEARKKN
GKETLLVGWSNEDRTRLWLEAWRLSQRGWHVNVLAEPLESPRPELFPGQHIFVWTGRAATPLQEELLSHWQEQGFSIHFH
GQN

Specific function: Controls the expression of 6 small proteins that may play a role in biofilm maturation. Binds to and represses the operator of the ycgZ-ymgA-ariR-ymgC operon, it also regulates yliL and ynaK. Binding is antagonized by YcgF upon blue-light (470 nm) irradia

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787409, Length=242, Percent_Identity=65.702479338843, Blast_Score=330, Evalue=7e-92,
Organism=Escherichia coli, GI1788448, Length=238, Percent_Identity=49.5798319327731, Blast_Score=236, Evalue=1e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 28169; Mature: 28038

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFYSIGEVAERCGINPVTLRAWQRRYGLLKPQRSEGGHRQFDEEDILRIEEIKRWIERG
CCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
VSVGKVKALLEDNLPAARDESAHLQEEMMSILRYMQPARIRAKLMALSHQHPVDTLIDSL
CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHH
LVPVRQRLKLDQNTSLVISSMLDGLLIDCVALFLAEARKKNGKETLLVGWSNEDRTRLWL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
EAWRLSQRGWHVNVLAEPLESPRPELFPGQHIFVWTGRAATPLQEELLSHWQEQGFSIHF
HHHHHHCCCCEEEEEHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
HGQN
ECCC
>Mature Secondary Structure 
AFYSIGEVAERCGINPVTLRAWQRRYGLLKPQRSEGGHRQFDEEDILRIEEIKRWIERG
CCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
VSVGKVKALLEDNLPAARDESAHLQEEMMSILRYMQPARIRAKLMALSHQHPVDTLIDSL
CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHH
LVPVRQRLKLDQNTSLVISSMLDGLLIDCVALFLAEARKKNGKETLLVGWSNEDRTRLWL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
EAWRLSQRGWHVNVLAEPLESPRPELFPGQHIFVWTGRAATPLQEELLSHWQEQGFSIHF
HHHHHHCCCCEEEEEHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
HGQN
ECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]