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The map label for this gene is cdaR [H]

Identifier: 152968758

GI number: 152968758

Start: 209206

End: 210417

Strand: Direct

Name: cdaR [H]

Synonym: KPN_00177

Alternate gene names: 152968758

Gene position: 209206-210417 (Clockwise)

Preceding gene: 152968757

Following gene: 152968763

Centisome position: 3.94

GC content: 60.73

Gene sequence:

>1212_bases
ATGCAGCGCGACGATGACTCTTTTATGCTGGTGCCCAGCAAAGGGGAGGACTACATGGCTGGCTGGCATCTTGATACCAA
AATGGCGCAGGATATTGTGGCGCGGACCATGCGCATCATCGATACCAATATCAACGTGATGGATGCCCGCGGGCGGATCA
TCGGCAGCGGCGATCGGGAAAGGATTGGTGAATTGCACGAAGGCGCGCTGCTGGTCCTCTCCCAGGGGCGGGTGGTGGAT
ATCGACGACGCGGTCGCTCGCCATCTGCACGGGGTTCGCCAGGGGATTAACCTGCCGCTGCGCCTGGAGGGGGAGATCGT
CGGGGTGATCGGCCTGACCGGCGAGCCGGAGTCGCTGCGAAAATATGGCGAGCTGGTGTGCATGACAGCAGAGATGATGC
TGGAGCAGTCGCGGCTGATGCATCTCCTGGCCCAGGACAGCCGTCTGCGCGAAGAGCTGGTGATGAACCTGATTCAGGCG
GAAGAGCATACCCCGGCGCTGAACGAATGGGCTCAGCGTTTAGGCATCGATCTCAATCAGCCGCGCGTGGTGGCGATGAT
TGAGGTAGACAGCGGTCAGCTCGGCGTGGACAGCGCGATGGCGGAACTGCAACAGTTACAGAACGCGCTGACCACCCCTG
ATCGCAATAATCTGGTGGCCATTGTCTCGCTCACGGAAATGGTGGTGCTGAAACCGGCGCTGAACAGCTTTGGCCGCTGG
GACGCTGACGATCACGTCCGGCGCGTCGAGCAGCTTATCGCCAGGATGAAAGAGAATGGCCAGCTGCGCTTTCGCGTAGC
GCTGGGCAACTTCTTCACCGGCCCAGGAAGTATCGCCCGCTCTTACCGTACCGCACGGACGACGATGATGGTTGGCAAGC
AGCGGATGCCGGAGAGCCGCAGTTATTTCTATCAGGATCTGATGCTGCCGGTGCTGCTCGACAGCCTGCGCGGCGGCTGG
CAGGCCAATGAGCTGGCCCGTCCGCTGGCGCGTTTGAAGGCCATGGACAACAACGGGCTGCTGCGGCGGACGCTGCAGGC
GTGGTTTCGCCATAACGTGCAGCCGCTGGCGACGTCAAAGGCGCTGTTTATTCATCGCAATACGCTGGAGTACCGGTTGA
ACCGTATCTCGGAGCTGACCGGCCTGGATCTCGGTAGCTTTGACGACAGGCTGCTGCTGTATATCGCGCTGCAGCTGGAT
GAACAACGCTAA

Upstream 100 bases:

>100_bases
CTTCCCAAGCCCCTTCCCTCGCCGAGGGCAGGGGCTTTTTTCGTTCTGTGACCGCCCCCACAACTCCACATATCTCACCC
CGGCTTAGTGCAAATGCACA

Downstream 100 bases:

>100_bases
GACGTGGAGGCAAAAAAATGCCGGGCAGCGACGCGCCATACCCGGCCTGGACGATGCATGCTGTCTGGAGTGGATAGAGA
CCACCAGCCCGGCCAGGCAA

Product: carbohydrate diacid transcriptional activator CdaR

Products: NA

Alternate protein names: Sugar diacid regulator [H]

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MQRDDDSFMLVPSKGEDYMAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGRVVD
IDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPESLRKYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQA
EEHTPALNEWAQRLGIDLNQPRVVAMIEVDSGQLGVDSAMAELQQLQNALTTPDRNNLVAIVSLTEMVVLKPALNSFGRW
DADDHVRRVEQLIARMKENGQLRFRVALGNFFTGPGSIARSYRTARTTMMVGKQRMPESRSYFYQDLMLPVLLDSLRGGW
QANELARPLARLKAMDNNGLLRRTLQAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGSFDDRLLLYIALQLD
EQR

Sequences:

>Translated_403_residues
MQRDDDSFMLVPSKGEDYMAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGRVVD
IDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPESLRKYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQA
EEHTPALNEWAQRLGIDLNQPRVVAMIEVDSGQLGVDSAMAELQQLQNALTTPDRNNLVAIVSLTEMVVLKPALNSFGRW
DADDHVRRVEQLIARMKENGQLRFRVALGNFFTGPGSIARSYRTARTTMMVGKQRMPESRSYFYQDLMLPVLLDSLRGGW
QANELARPLARLKAMDNNGLLRRTLQAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGSFDDRLLLYIALQLD
EQR
>Mature_403_residues
MQRDDDSFMLVPSKGEDYMAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGRVVD
IDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPESLRKYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQA
EEHTPALNEWAQRLGIDLNQPRVVAMIEVDSGQLGVDSAMAELQQLQNALTTPDRNNLVAIVSLTEMVVLKPALNSFGRW
DADDHVRRVEQLIARMKENGQLRFRVALGNFFTGPGSIARSYRTARTTMMVGKQRMPESRSYFYQDLMLPVLLDSLRGGW
QANELARPLARLKAMDNNGLLRRTLQAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGSFDDRLLLYIALQLD
EQR

Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=385, Percent_Identity=94.2857142857143, Blast_Score=741, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 45675; Mature: 45675

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRDDDSFMLVPSKGEDYMAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRE
CCCCCCCEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCEECCCCHH
RIGELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPESLR
HHHHHCCCEEEEEECCCEEECHHHHHHHHHHHHHCCCCCEEECCEEEEEEECCCCHHHHH
KYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEEHTPALNEWAQRLGIDLNQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
PRVVAMIEVDSGQLGVDSAMAELQQLQNALTTPDRNNLVAIVSLTEMVVLKPALNSFGRW
CEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHCCCC
DADDHVRRVEQLIARMKENGQLRFRVALGNFFTGPGSIARSYRTARTTMMVGKQRMPESR
CCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH
SYFYQDLMLPVLLDSLRGGWQANELARPLARLKAMDNNGLLRRTLQAWFRHNVQPLATSK
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC
ALFIHRNTLEYRLNRISELTGLDLGSFDDRLLLYIALQLDEQR
EEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCC
>Mature Secondary Structure
MQRDDDSFMLVPSKGEDYMAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRE
CCCCCCCEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCEECCCCHH
RIGELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPESLR
HHHHHCCCEEEEEECCCEEECHHHHHHHHHHHHHCCCCCEEECCEEEEEEECCCCHHHHH
KYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEEHTPALNEWAQRLGIDLNQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
PRVVAMIEVDSGQLGVDSAMAELQQLQNALTTPDRNNLVAIVSLTEMVVLKPALNSFGRW
CEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHCCCC
DADDHVRRVEQLIARMKENGQLRFRVALGNFFTGPGSIARSYRTARTTMMVGKQRMPESR
CCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH
SYFYQDLMLPVLLDSLRGGWQANELARPLARLKAMDNNGLLRRTLQAWFRHNVQPLATSK
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC
ALFIHRNTLEYRLNRISELTGLDLGSFDDRLLLYIALQLDEQR
EEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 10762278 [H]