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The map label for this gene is hypB [H]

Identifier: 150401444

GI number: 150401444

Start: 1046693

End: 1047355

Strand: Reverse

Name: hypB [H]

Synonym: Maeo_1020

Alternate gene names: 150401444

Gene position: 1047355-1046693 (Counterclockwise)

Preceding gene: 150401448

Following gene: 150401436

Centisome position: 66.73

GC content: 28.21

Gene sequence:

>663_bases
ATGCATTTTGTCAGTGTGGCAGATATCGGAAAAGATTTATTAAAAGTAAATAAAAAACGAGCAGATAAAATTAGAAAATT
ATTAAATGAAAATAATATAATTGCATTTGACTTTATGGGGGCAACAGGTAGTGGAAAAACCCTTTTAATAGAAAAATTAA
TAGATAATTTAAAGGATAAATATAATGTGGCCTGTATTGCAGGAGATGTAATAGCAAAATATGATGCAGATAGATTAAAA
CGACATGGAGTGCAAGTGATACCATTAAATACAGGAAAAGAATGTCATTTAGATGCCCATTTAGTTAAACATGCTTTTAA
TGATTTAGATTTAGAGAATATCGATATATTATTTATAGAAAATGTAGGAAATCTCATATGTCCTGCTGATTTTGATTTAG
GAACTCATAAAAGAATAGTGGTTATTAGCGTAACCGAAGGAGACGATACAGTAGAAAAACATCCGGAAATATTTAAAACA
GCAGATTTAACCATTATAAATAAAATAGATATTGCAGACGCCGTAGGAGCTGACCCAATAAAGATGCGAGAAGATGCAAA
AAAGTTAAATAAAGAAATGGGAGTATTATTAACATCTATAAAAAATAATGAAGGAATAGATAAAGTAATAGAATTTATAG
AGAAAACTAAAACGAAATATTAA

Upstream 100 bases:

>100_bases
TATGATAATTAGGACATTAGAGAACATATATTTTGAACATATTATATACTTTACATTGATTATACATTATTTTTCATTAT
TATATAAATGTGGTGATAAT

Downstream 100 bases:

>100_bases
TATATTAATGTATATTAATCCCTATTTAGCAACATATAACTTCTACAAATATGGGTTTTTTTACTACTTTATCATACCAT
AAACATATTCCAACAAATAA

Product: hydrogenase accessory protein HypB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MHFVSVADIGKDLLKVNKKRADKIRKLLNENNIIAFDFMGATGSGKTLLIEKLIDNLKDKYNVACIAGDVIAKYDADRLK
RHGVQVIPLNTGKECHLDAHLVKHAFNDLDLENIDILFIENVGNLICPADFDLGTHKRIVVISVTEGDDTVEKHPEIFKT
ADLTIINKIDIADAVGADPIKMREDAKKLNKEMGVLLTSIKNNEGIDKVIEFIEKTKTKY

Sequences:

>Translated_220_residues
MHFVSVADIGKDLLKVNKKRADKIRKLLNENNIIAFDFMGATGSGKTLLIEKLIDNLKDKYNVACIAGDVIAKYDADRLK
RHGVQVIPLNTGKECHLDAHLVKHAFNDLDLENIDILFIENVGNLICPADFDLGTHKRIVVISVTEGDDTVEKHPEIFKT
ADLTIINKIDIADAVGADPIKMREDAKKLNKEMGVLLTSIKNNEGIDKVIEFIEKTKTKY
>Mature_220_residues
MHFVSVADIGKDLLKVNKKRADKIRKLLNENNIIAFDFMGATGSGKTLLIEKLIDNLKDKYNVACIAGDVIAKYDADRLK
RHGVQVIPLNTGKECHLDAHLVKHAFNDLDLENIDILFIENVGNLICPADFDLGTHKRIVVISVTEGDDTVEKHPEIFKT
ADLTIINKIDIADAVGADPIKMREDAKKLNKEMGVLLTSIKNNEGIDKVIEFIEKTKTKY

Specific function: Could be involved in nickel binding and accumulation [H]

COG id: COG0378

COG function: function code OK; Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypB/hupM family [H]

Homologues:

Organism=Escherichia coli, GI1789082, Length=206, Percent_Identity=37.8640776699029, Blast_Score=151, Evalue=4e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003495
- InterPro:   IPR004392
- InterPro:   IPR012202 [H]

Pfam domain/function: PF02492 cobW [H]

EC number: NA

Molecular weight: Translated: 24562; Mature: 24562

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHFVSVADIGKDLLKVNKKRADKIRKLLNENNIIAFDFMGATGSGKTLLIEKLIDNLKDK
CCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHH
YNVACIAGDVIAKYDADRLKRHGVQVIPLNTGKECHLDAHLVKHAFNDLDLENIDILFIE
CEEEEEECCHHHHCCHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEE
NVGNLICPADFDLGTHKRIVVISVTEGDDTVEKHPEIFKTADLTIINKIDIADAVGADPI
CCCCEECCCCCCCCCCCEEEEEEEECCCCHHHHCCHHHHHCCEEEEEEECHHHHCCCCCH
KMREDAKKLNKEMGVLLTSIKNNEGIDKVIEFIEKTKTKY
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MHFVSVADIGKDLLKVNKKRADKIRKLLNENNIIAFDFMGATGSGKTLLIEKLIDNLKDK
CCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHH
YNVACIAGDVIAKYDADRLKRHGVQVIPLNTGKECHLDAHLVKHAFNDLDLENIDILFIE
CEEEEEECCHHHHCCHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEE
NVGNLICPADFDLGTHKRIVVISVTEGDDTVEKHPEIFKTADLTIINKIDIADAVGADPI
CCCCEECCCCCCCCCCCEEEEEEEECCCCHHHHCCHHHHHCCEEEEEEECHHHHCCCCCH
KMREDAKKLNKEMGVLLTSIKNNEGIDKVIEFIEKTKTKY
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]