| Definition | Methanococcus aeolicus Nankai-3, complete genome. |
|---|---|
| Accession | NC_009635 |
| Length | 1,569,500 |
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The map label for this gene is 150401356
Identifier: 150401356
GI number: 150401356
Start: 952754
End: 953743
Strand: Reverse
Name: 150401356
Synonym: Maeo_0930
Alternate gene names: NA
Gene position: 953743-952754 (Counterclockwise)
Preceding gene: 150401357
Following gene: 150401355
Centisome position: 60.77
GC content: 31.11
Gene sequence:
>990_bases TTGGAAAAAGAATGGATAAAGGTAGGAATTACATTATATGGGCAAAGAAGATATATGGACGCAATAGGGGCGATAGATAC GGCAATATCCATTAACCCAAAAAATAGCAACGCCTGGAAGCATAAAGGTATCGCATTTAGAAAATGGAAAAAATACCCCA ATGCAATAGAATGTTTTGATAAGGCACTAAATTTAAACCCAAAAAATAGCAGTGCTTGGATGCACAAAGGAGTTTTATAT GGCAAAATAAATAAATATGAAGAAGCAATAACATGTCTCGATAAATCATTAGAATTAACACCAAATAATGCCCGAGTTTG GATATATAAGGGAGTAATACTTAGAAAATGGGAAAAATATGAAGAAGCAATAACTTATTTTAATAAGGCGTTGGAAATAA ATCCAAAAGATGCCCGAGTTTGGAAACATGCGGGAGTTCTATTTAGTAAATTGGAAAAATATGAAGAAGCACTGTTATGT TTTAACAAAGCAACAGAAGTTAATCCACGAGTTAAACAGATTTTCGATGAAAAAGGAGTTGTGCTTGAAAATTTAGGGAG GTATGAAGAAGCACTGGAATGTTATAATATTTTATTGAATAGAAACCCAAAAAATAGTGGAATATTAAATCTTAAAATAC GAGTTCTTAGAAAGATGAAAAGATACGAAGATGCCCTAAATTGCTGTGATGAGGTATTAAATATAAATCCAGAAAACAAA AATACTTATTTTATTAAACTACAAATACTCAGAAATTTGGAAAGATACGAAGATGCCCTAAATTGCTGTGATGAGGTATT AAATATTATTTCAAGTTCAAAAAAAGGCAATATTTGGAATATCAAAGGAGATATATTCAATGATTTGGGGGAGTATAATA AAGCAATAGGATGTTTCAATAAGGCGTTGGAAATAAATCCGCATGATGATTATGCCAAACAAGGCAAAATATTTGCAATC AATATATTGGAATTGCAAGAGGATATGTAA
Upstream 100 bases:
>100_bases AGCACAACAAAAATTAAAAAATATGTGCATGGCATGCGATGAATTTGAAAATGAAATAAAAGAATAAAAATAAAAAATAA AAGAATAAATAGGAGATAAT
Downstream 100 bases:
>100_bases TCTAACTATTTTTAACATTATATATGATTTTACAATTTTGCATTTTCTATTTATATATTTAAATTAATATCAATTAACTT TTTTAATAACATTTTAATAA
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 329; Mature: 329
Protein sequence:
>329_residues MEKEWIKVGITLYGQRRYMDAIGAIDTAISINPKNSNAWKHKGIAFRKWKKYPNAIECFDKALNLNPKNSSAWMHKGVLY GKINKYEEAITCLDKSLELTPNNARVWIYKGVILRKWEKYEEAITYFNKALEINPKDARVWKHAGVLFSKLEKYEEALLC FNKATEVNPRVKQIFDEKGVVLENLGRYEEALECYNILLNRNPKNSGILNLKIRVLRKMKRYEDALNCCDEVLNINPENK NTYFIKLQILRNLERYEDALNCCDEVLNIISSSKKGNIWNIKGDIFNDLGEYNKAIGCFNKALEINPHDDYAKQGKIFAI NILELQEDM
Sequences:
>Translated_329_residues MEKEWIKVGITLYGQRRYMDAIGAIDTAISINPKNSNAWKHKGIAFRKWKKYPNAIECFDKALNLNPKNSSAWMHKGVLY GKINKYEEAITCLDKSLELTPNNARVWIYKGVILRKWEKYEEAITYFNKALEINPKDARVWKHAGVLFSKLEKYEEALLC FNKATEVNPRVKQIFDEKGVVLENLGRYEEALECYNILLNRNPKNSGILNLKIRVLRKMKRYEDALNCCDEVLNINPENK NTYFIKLQILRNLERYEDALNCCDEVLNIISSSKKGNIWNIKGDIFNDLGEYNKAIGCFNKALEINPHDDYAKQGKIFAI NILELQEDM >Mature_329_residues MEKEWIKVGITLYGQRRYMDAIGAIDTAISINPKNSNAWKHKGIAFRKWKKYPNAIECFDKALNLNPKNSSAWMHKGVLY GKINKYEEAITCLDKSLELTPNNARVWIYKGVILRKWEKYEEAITYFNKALEINPKDARVWKHAGVLFSKLEKYEEALLC FNKATEVNPRVKQIFDEKGVVLENLGRYEEALECYNILLNRNPKNSGILNLKIRVLRKMKRYEDALNCCDEVLNINPENK NTYFIKLQILRNLERYEDALNCCDEVLNIISSSKKGNIWNIKGDIFNDLGEYNKAIGCFNKALEINPHDDYAKQGKIFAI NILELQEDM
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 9 TPR repeats [H]
Homologues:
Organism=Homo sapiens, GI167466177, Length=203, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=7e-17, Organism=Homo sapiens, GI167466175, Length=203, Percent_Identity=28.5714285714286, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI32307148, Length=287, Percent_Identity=21.9512195121951, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI32307150, Length=287, Percent_Identity=21.9512195121951, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI83415184, Length=297, Percent_Identity=23.9057239057239, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI301336134, Length=297, Percent_Identity=23.9057239057239, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI170784867, Length=256, Percent_Identity=23.4375, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI310110582, Length=148, Percent_Identity=29.0540540540541, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI310131789, Length=148, Percent_Identity=29.0540540540541, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI310123097, Length=148, Percent_Identity=29.0540540540541, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI296531396, Length=208, Percent_Identity=25.9615384615385, Blast_Score=65, Evalue=6e-11, Organism=Caenorhabditis elegans, GI115532692, Length=303, Percent_Identity=22.1122112211221, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI115532690, Length=287, Percent_Identity=22.6480836236934, Blast_Score=81, Evalue=7e-16, Organism=Caenorhabditis elegans, GI25147174, Length=178, Percent_Identity=24.7191011235955, Blast_Score=70, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6319589, Length=303, Percent_Identity=23.1023102310231, Blast_Score=80, Evalue=6e-16, Organism=Saccharomyces cerevisiae, GI6319387, Length=211, Percent_Identity=28.436018957346, Blast_Score=79, Evalue=8e-16, Organism=Saccharomyces cerevisiae, GI6321960, Length=124, Percent_Identity=25, Blast_Score=62, Evalue=9e-11, Organism=Drosophila melanogaster, GI17647755, Length=303, Percent_Identity=21.4521452145215, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24585827, Length=303, Percent_Identity=21.4521452145215, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24585829, Length=303, Percent_Identity=21.4521452145215, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24647123, Length=199, Percent_Identity=28.643216080402, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24659892, Length=202, Percent_Identity=24.7524752475248, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI19920486, Length=318, Percent_Identity=21.0691823899371, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI161076610, Length=318, Percent_Identity=21.0691823899371, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI24656717, Length=309, Percent_Identity=22.6537216828479, Blast_Score=65, Evalue=8e-11, Organism=Drosophila melanogaster, GI18110006, Length=309, Percent_Identity=22.6537216828479, Blast_Score=65, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008940 - InterPro: IPR001440 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF00515 TPR_1 [H]
EC number: NA
Molecular weight: Translated: 38304; Mature: 38304
Theoretical pI: Translated: 8.84; Mature: 8.84
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKEWIKVGITLYGQRRYMDAIGAIDTAISINPKNSNAWKHKGIAFRKWKKYPNAIECFD CCCCEEEEEEEEECCHHHHHHHHHHHCEEEECCCCCCCCHHCCCHHHHHHCCCCHHHHHH KALNLNPKNSSAWMHKGVLYGKINKYEEAITCLDKSLELTPNNARVWIYKGVILRKWEKY HHHCCCCCCCCHHHHCCEEEECHHHHHHHHHHHHCCCEECCCCCEEEEECCHHHHHHHHH EEAITYFNKALEINPKDARVWKHAGVLFSKLEKYEEALLCFNKATEVNPRVKQIFDEKGV HHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCH VLENLGRYEEALECYNILLNRNPKNSGILNLKIRVLRKMKRYEDALNCCDEVLNINPENK HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC NTYFIKLQILRNLERYEDALNCCDEVLNIISSSKKGNIWNIKGDIFNDLGEYNKAIGCFN CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHH KALEINPHDDYAKQGKIFAINILELQEDM HHEECCCCCCHHHCCCEEEEEEEECCCCC >Mature Secondary Structure MEKEWIKVGITLYGQRRYMDAIGAIDTAISINPKNSNAWKHKGIAFRKWKKYPNAIECFD CCCCEEEEEEEEECCHHHHHHHHHHHCEEEECCCCCCCCHHCCCHHHHHHCCCCHHHHHH KALNLNPKNSSAWMHKGVLYGKINKYEEAITCLDKSLELTPNNARVWIYKGVILRKWEKY HHHCCCCCCCCHHHHCCEEEECHHHHHHHHHHHHCCCEECCCCCEEEEECCHHHHHHHHH EEAITYFNKALEINPKDARVWKHAGVLFSKLEKYEEALLCFNKATEVNPRVKQIFDEKGV HHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCH VLENLGRYEEALECYNILLNRNPKNSGILNLKIRVLRKMKRYEDALNCCDEVLNINPENK HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC NTYFIKLQILRNLERYEDALNCCDEVLNIISSSKKGNIWNIKGDIFNDLGEYNKAIGCFN CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHH KALEINPHDDYAKQGKIFAINILELQEDM HHEECCCCCCHHHCCCEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087; 9697413 [H]