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The map label for this gene is rpoE1 [H]

Identifier: 150400715

GI number: 150400715

Start: 305922

End: 306509

Strand: Direct

Name: rpoE1 [H]

Synonym: Maeo_0280

Alternate gene names: 150400715

Gene position: 305922-306509 (Clockwise)

Preceding gene: 150400712

Following gene: 150400716

Centisome position: 19.49

GC content: 35.88

Gene sequence:

>588_bases
TTGTATAAATTAATAACCATATCTGACACCATTAGAGTTCCACCCAAAATGTTCGGAGCTCCCTTAAAAGATAGCATACA
TAAAATATTAATGGAGAAATACGAAGGATTAATGGATAAAGACTTTGGTTTTATAATGTCCATAGGCGATATCGGAGAAA
TTGGGGGGGGCAAGGTAGTTTATGGAGACGGAGCGGCATACCACCCTGCAATCTTTGATTTATTATGTTATGAACCAGAA
CTATATGAAATTATAGAAGGAGAAATTGTAGATGTTGTAGAATTCGGTCTTTTCGTAAGATTGGGCCCGTTAGATGGACT
TATACACATATCCCAAATTATGGATGATTTCGTATCTTATGACCCGCAAAGGGGTGCTATCATTGGAAAAGAAAGCGGAA
AAGTTATTGAAAAAGGCGATAAAGTTAGGGCAAGAATCGTGGCAATTAGTTTAAGAGAAGCTAAAAGAAGAGGAAGTAAA
ATAGCTTTAACGATGAGACAGCAAGGACTAGGAAAATTAGAATGGATTGAAGAAGAGAAAAATAAAAGAGCTAATATCAA
CAATACAAAGGCTATTGCGGAAGAATAA

Upstream 100 bases:

>100_bases
ATACAATAGATATAAAAAATATACTTTGTATTTCTAATGTTCTTTATATATACTATGTTTTAATTATTTAATTAATATTA
ATTTAATTAGAGGTGATTAC

Downstream 100 bases:

>100_bases
TCTACTACTCATAATGAATATATACATTCATTTATTTATTTTATAATTAATGATATAATAAATCAATAATTGCTATAATT
AAGGTGGAATTATGAAAAAA

Product: DNA-directed RNA polymerase subunit E'

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MYKLITISDTIRVPPKMFGAPLKDSIHKILMEKYEGLMDKDFGFIMSIGDIGEIGGGKVVYGDGAAYHPAIFDLLCYEPE
LYEIIEGEIVDVVEFGLFVRLGPLDGLIHISQIMDDFVSYDPQRGAIIGKESGKVIEKGDKVRARIVAISLREAKRRGSK
IALTMRQQGLGKLEWIEEEKNKRANINNTKAIAEE

Sequences:

>Translated_195_residues
MYKLITISDTIRVPPKMFGAPLKDSIHKILMEKYEGLMDKDFGFIMSIGDIGEIGGGKVVYGDGAAYHPAIFDLLCYEPE
LYEIIEGEIVDVVEFGLFVRLGPLDGLIHISQIMDDFVSYDPQRGAIIGKESGKVIEKGDKVRARIVAISLREAKRRGSK
IALTMRQQGLGKLEWIEEEKNKRANINNTKAIAEE
>Mature_195_residues
MYKLITISDTIRVPPKMFGAPLKDSIHKILMEKYEGLMDKDFGFIMSIGDIGEIGGGKVVYGDGAAYHPAIFDLLCYEPE
LYEIIEGEIVDVVEFGLFVRLGPLDGLIHISQIMDDFVSYDPQRGAIIGKESGKVIEKGDKVRARIVAISLREAKRRGSK
IALTMRQQGLGKLEWIEEEKNKRANINNTKAIAEE

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1095

COG function: function code K; DNA-directed RNA polymerase, subunit E'

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI4505947, Length=149, Percent_Identity=25.503355704698, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17510349, Length=149, Percent_Identity=24.1610738255034, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967
- InterPro:   IPR005576
- InterPro:   IPR004519 [H]

Pfam domain/function: PF03876 RNA_pol_Rpb7_N; PF00575 S1 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 21789; Mature: 21789

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKLITISDTIRVPPKMFGAPLKDSIHKILMEKYEGLMDKDFGFIMSIGDIGEIGGGKVV
CEEEEEECCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEE
YGDGAAYHPAIFDLLCYEPELYEIIEGEIVDVVEFGLFVRLGPLDGLIHISQIMDDFVSY
ECCCCCCCHHHHHHHHCCCHHHHHHCCCHHHHHHHHHEEEECCCCHHHHHHHHHHHHHCC
DPQRGAIIGKESGKVIEKGDKVRARIVAISLREAKRRGSKIALTMRQQGLGKLEWIEEEK
CCCCCEEEECCCCCEECCCCCEEEEEEEEEHHHHHHCCCEEEEEEHHCCCCCHHHHHHHH
NKRANINNTKAIAEE
CCCCCCCCCHHCCCC
>Mature Secondary Structure
MYKLITISDTIRVPPKMFGAPLKDSIHKILMEKYEGLMDKDFGFIMSIGDIGEIGGGKVV
CEEEEEECCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEE
YGDGAAYHPAIFDLLCYEPELYEIIEGEIVDVVEFGLFVRLGPLDGLIHISQIMDDFVSY
ECCCCCCCHHHHHHHHCCCHHHHHHCCCHHHHHHHHHEEEECCCCHHHHHHHHHHHHHCC
DPQRGAIIGKESGKVIEKGDKVRARIVAISLREAKRRGSKIALTMRQQGLGKLEWIEEEK
CCCCCEEEECCCCCEECCCCCEEEEEEEEEHHHHHHCCCEEEEEEHHCCCCCHHHHHHHH
NKRANINNTKAIAEE
CCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]